Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05795 ATGGGTGGTAGTTGGAAGACGGCAATGATAATGTCATCGTCGTTGAGTCACGTCCGTCCGCTAACATGCGCATCATCGTCATTATCACGAATAGCTCCCCATCCACACGACCTCGTCAAATGGGTAACCAGAGAAGGTGGTTTCGTTCACCGTGCGGTTAAGATTGCTCAATTCGATTCCTCCAATGGTTTAGGGTTAGTAGCTAAGGAACAAATCCCAATTGGCACTGACCTAATTGTTCTTCCCCAACACATTCCTTTGCACTTCACCTCTCATCATAATCACTCTGATTCTCTCCTCCTTCAATTGTCCTCCAATGTTCCCGATGAACTATGGGCAATGAAACTGGGTTTGAAGCTTCTACATGAAAGGGCAAAACTTGGATCTTTTTGGTGGCCATACATCAGCAATCTCCCACAAACTTACACTCTTCCTATCTTTTTTCCTGGGGAAGACATTAAGAATTTGCAGTATGCTCCTATTCTTCACCAGGTAAACAAAAGATGCCGATTTCTTCTCGATTTTGAGCAACAAGTCAAGCATGCATTAGTCGGTCTTACACCAGATAAACATCCTTTTGGTGGCCAAGAAGTAGATGCTTCATCTCTTGGATGGGCAATGTCAGCAGTCTCATCTAGAGCATTCAAGTTGCATGGTAACAAGCAATCAGATGGGATAGACTTCAACATACCCACGATGCTCCCTCTAATTGACATGTGTAATCATAGTTTTAATCCGAATGCTAGAATTGTTCAGGAACAAGAAACTGGTAGCACAAAGATGCGGGTGAAGGTTGTGGCTGAGAAAGCAATCAAAGAAAATGATCCTTTATTGCTTTGCTATGGATGTTTAAGCAATGATCTTTTCCTTCTTGATTATGGATTTGTGATACAGTCAAACCCTTATGACTGTATTGAGCTTAAATATGATGGTGCTCTTTTGGATGCTGCAAGCATGGCAGCTGGAGTTTCTTCACCAAACTTCTCCACACCGGCTCCATGGCAGCAACTTGTTTTATCTCAGTTAAATCTAGCTGGAGAATCTCCAAATCTCAAGGTGAGCTTAGGTGGTCAAGAAATAATAGAAGGGCGCTTGTTGGCTGCACTGAGAGTACTCCTTGCAAGTGATATGGAAACTGTACAAAAGCATGACCTCAACACACTCAAGTCTTTAGATGCTGAGGCTCCTCTTGGTGTTGCAAATGATATTGCTGTATTTCGTACCTTGATTGCTCTGTGTGTCATTGCACTGGAACACTTTCCCACCAAATTAGTGGATGATGAAACTTTATTGAAGCAGGGTGCTTCAGGTTCAACAGAGTTAGCCATTCAGTTCAGAATCCAAAAGAAGTCTGTAATTATAGATGTAATGAGAAACCTCTCAAGGAAGGTAAAGCTTATTTCATCAAAGGATACAGTTACTGCTGAAGGCTAA 1434 0.4219 MGGSWKTAMIMSSSLSHVRPLTCASSSLSRIAPHPHDLVKWVTREGGFVHRAVKIAQFDSSNGLGLVAKEQIPIGTDLIVLPQHIPLHFTSHHNHSDSLLLQLSSNVPDELWAMKLGLKLLHERAKLGSFWWPYISNLPQTYTLPIFFPGEDIKNLQYAPILHQVNKRCRFLLDFEQQVKHALVGLTPDKHPFGGQEVDASSLGWAMSAVSSRAFKLHGNKQSDGIDFNIPTMLPLIDMCNHSFNPNARIVQEQETGSTKMRVKVVAEKAIKENDPLLLCYGCLSNDLFLLDYGFVIQSNPYDCIELKYDGALLDAASMAAGVSSPNFSTPAPWQQLVLSQLNLAGESPNLKVSLGGQEIIEGRLLAALRVLLASDMETVQKHDLNTLKSLDAEAPLGVANDIAVFRTLIALCVIALEHFPTKLVDDETLLKQGASGSTELAIQFRIQKKSVIIDVMRNLSRKVKLISSKDTVTAEG 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05795 477 Pfam Rubisco LSMT substrate-binding 332 452 IPR015353 -
Trre8g05795 477 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 30 438 - -
Trre8g05795 477 SMART set_7 51 288 IPR001214 GO:0005515
Trre8g05795 477 FunFam Histone-lysine N-methyltransferase setd3 6 295 - -
Trre8g05795 477 SUPERFAMILY SET domain 33 300 IPR046341 -
Trre8g05795 477 Gene3D - 332 472 IPR036464 -
Trre8g05795 477 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 292 470 IPR036464 -
Trre8g05795 477 FunFam SET domain containing protein 318 471 - -
Trre8g05795 477 Pfam SET domain 63 282 IPR001214 GO:0005515
Trre8g05795 477 Gene3D set domain protein methyltransferase, domain 1 4 295 - -
Trre8g05795 477 CDD SET_LSMT 52 296 - -
Trre8g05795 477 ProSiteProfiles SET domain profile. 51 282 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05795 Trre-Chr8 58854081 58857837 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre8g05795 SET 7.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05795 - - gmx:100778387 748.043