Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05794 ATGGGTGGTAGTTGGAAGACGGCAATGATAATGTCATCGTCGTTGAGTCACGTCCGTCCGCTAACATGCGCATCATCGTCATTATCACGAATAGCTCCCCATCCACACGACCTCGTCAAATGGGTAACCAGAGAAGGTGGTTTCGTTCACCGTGCGGTTAAGATTGCTCAATTCGATTCCTCCAATGGTTTAGGGTTAGTAGCTAAGGAACAAATCCCAATTGGCACTGACCTAATTGTTCTTCCCCAACACATTCCTTTGCACTTCACCTCTCATCATAATCACTCTGATTCTCTCCTCCTTCAATTGTCCTCCAATGTTCCCGATGAACTATGGGCAATGAAACTGGGTTTGAAGCTTCTACATGAAAGGGCAAAACTTGGATCTTTTTGGTGGCCATACATCAGCAATCTCCCACAAACTTACACTCTTCCTATCTTTTTTCCTGGGGAAGACATTAAGAATTTGCAGTATGCTCCTATTCTTCACCAGGTAAACAAAAGATGCCGATTTCTTCTCGATTTTGAGCAACAAGTCAAGCATGCATTAGTCGGTCTTACACCAGATAAACATCCTTTTGGTGGCCAAGAAGTAGATGCTTCATCTCTTGGATGGGCAATGTCAGCAGTCTCATCTAGAGCATTCAAGTTGCATGGTAACAAGCAATCAGATGGGATAGACTTCAACATACCCACGATGCTCCCTCTAATTGACATGTGTAATCATAGTTTTAATCCGAATGCTAGAATTGTTCAGGAACAAGAAACTGGTAGCACAAAGATGCGGGTTGTGGCTGAGAAAGCAATCAAAGAAAATGATCCTTTATTGCTTTGCTATGGATGTTTAAGCAATGATCTTTTCCTTCTTGATTATGGATTTGTGATACAGTCAAACCCTTATGACTGTATTGAGCTTAAATATGATGGTGCTCTTTTGGATGCTGCAAGCATGGCAGCTGGAGTTTCTTCACCAAACTTCTCCACACCGGCTCCATGGCAGCAACTTGTTTTATCTCAGTTAAATCTAGCTGGAGAATCTCCAAATCTCAAGGTGAGCTTAGGTGGTCAAGAAATAATAGAAGGGCGCTTGTTGGCTGCACTGAGAGTACTCCTTGCAAGTGATATGGAAACTGTACAAAAGCATGACCTCAACACACTCAAGTCTTTAGATGCTGAGGCTCCTCTTGGTGTTGCAAATGATATTGCTGTATTTCGTACCTTGATTGCTCTGTGTGTCATTGCACTGGAACACTTTCCCACCAAATTAGTGGATGATGAAACTTTATTGAAGCAGGGTGCTTCAGGTTCAACAGAGTTAGCCATTCAGTTCAGAATCCAAAAGAAGTCTGTAATTATAGATGTAATGAGAAACCTCTCAAGGAAGGTAAAGCTTATTTCATCAAAGGATACAGTTACTGCTGAAGGCTAA 1428 0.4216 MGGSWKTAMIMSSSLSHVRPLTCASSSLSRIAPHPHDLVKWVTREGGFVHRAVKIAQFDSSNGLGLVAKEQIPIGTDLIVLPQHIPLHFTSHHNHSDSLLLQLSSNVPDELWAMKLGLKLLHERAKLGSFWWPYISNLPQTYTLPIFFPGEDIKNLQYAPILHQVNKRCRFLLDFEQQVKHALVGLTPDKHPFGGQEVDASSLGWAMSAVSSRAFKLHGNKQSDGIDFNIPTMLPLIDMCNHSFNPNARIVQEQETGSTKMRVVAEKAIKENDPLLLCYGCLSNDLFLLDYGFVIQSNPYDCIELKYDGALLDAASMAAGVSSPNFSTPAPWQQLVLSQLNLAGESPNLKVSLGGQEIIEGRLLAALRVLLASDMETVQKHDLNTLKSLDAEAPLGVANDIAVFRTLIALCVIALEHFPTKLVDDETLLKQGASGSTELAIQFRIQKKSVIIDVMRNLSRKVKLISSKDTVTAEG 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05794 475 Gene3D set domain protein methyltransferase, domain 1 4 293 - -
Trre8g05794 475 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 30 436 - -
Trre8g05794 475 ProSiteProfiles SET domain profile. 51 280 IPR001214 GO:0005515
Trre8g05794 475 CDD SET_LSMT 52 294 - -
Trre8g05794 475 Gene3D - 330 470 IPR036464 -
Trre8g05794 475 FunFam SET domain containing protein 316 469 - -
Trre8g05794 475 FunFam Histone-lysine N-methyltransferase setd3 6 293 - -
Trre8g05794 475 SUPERFAMILY SET domain 33 298 IPR046341 -
Trre8g05794 475 SMART set_7 51 286 IPR001214 GO:0005515
Trre8g05794 475 Pfam Rubisco LSMT substrate-binding 330 450 IPR015353 -
Trre8g05794 475 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 290 468 IPR036464 -
Trre8g05794 475 Pfam SET domain 63 280 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05794 Trre-Chr8 58854081 58857837 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre8g05794 SET 3.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05794 - - gmx:100778387 739.954