Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05792 ATGTCAATCATAATGGCAGCAGAATCATGGTTACTCTCTCAACCTTCTTCACTCTTGTACACCAAAACCAAATCTCCAATTATAATCTCAAATTCTATTAAGCCCTTCAAGCTACAAAACCCATCATCATCGTTTTCGCCCGTTCTTCTCCCTCTAACTACCAGAAGGAGAAGAACCGGCAATTCTTCTTTTCTCACATTTGCTGTCGATGAATCTGGGAATATCGACAAGGATCCATATGAAAATTTGGATGTCTTCATTGGTAATTTGCCTAGTAATATTGGACTTGAGACAGTTTTTAACCTTTCTAAGAAGGTTGGAACTGTACTAGGTGTTGTGATAAATCATGTTCCTGGCCAAAGTAGTTATGCACGTGTAATTATGAAAACAGTTGAAGAAGTTGAGAAGGCTATGAAAAAGTTCAATCGCTATGAATTAAATGGAAAATATTTGACTGTTAGTAGGGAGAAACCAGCAATAGGAGAAAAGCCTAAGTCCTGGCCAACATCTCCTATCTATGGTTCCAATTATGGTATCAGGGTTGAAAACTTGCCGAGGGATGTTGACCGTCGTCGCTTGGAAGAAATTTTCAGTAAATATGGTAAGGTTGAAAGTGTCAATATATTAGTCTTTGATGAAGAAGATGTCAATGAATTATCAACTGGCTATCTTAGAATGTCCGATGAGACTGATATCAAGAATGTTATTGCTGCTCTTGACGGTCAGGAAATAGATGTATCCAGTGTGTTTCCTCATGCGTACCCCAAAAGGTAG 774 0.3837 MSIIMAAESWLLSQPSSLLYTKTKSPIIISNSIKPFKLQNPSSSFSPVLLPLTTRRRRTGNSSFLTFAVDESGNIDKDPYENLDVFIGNLPSNIGLETVFNLSKKVGTVLGVVINHVPGQSSYARVIMKTVEEVEKAMKKFNRYELNGKYLTVSREKPAIGEKPKSWPTSPIYGSNYGIRVENLPRDVDRRRLEEIFSKYGKVESVNILVFDEEDVNELSTGYLRMSDETDIKNVIAALDGQEIDVSSVFPHAYPKR 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05792 257 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 179 245 IPR000504 GO:0003723
Trre8g05792 257 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 85 151 IPR000504 GO:0003723
Trre8g05792 257 SUPERFAMILY RNA-binding domain, RBD 84 244 IPR035979 GO:0003676
Trre8g05792 257 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 177 257 IPR000504 GO:0003723
Trre8g05792 257 PANTHER OS02G0815200 PROTEIN 72 245 - -
Trre8g05792 257 CDD RRM_SF 85 154 - -
Trre8g05792 257 Gene3D - 173 254 IPR012677 -
Trre8g05792 257 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 83 158 IPR000504 GO:0003723
Trre8g05792 257 Gene3D - 70 166 IPR012677 -
Trre8g05792 257 CDD RRM_SF 179 245 - -
Trre8g05792 257 SMART rrm1_1 178 252 IPR000504 GO:0003723
Trre8g05792 257 SMART rrm1_1 84 154 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05792 Trre-Chr8 58846785 58847843 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05792 60 257 Eukaryotic Initiation Factors Gene Family AT4G34110 22.059 2.41e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05792 - - tpra:123920832 197.208