Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05781 ATGGACGACGTAAAAGACAAGGTTAAAGGGTTCATGAAAAAAGTCACTTCTTCTTCTTCCTCTGGCAAATTCAAGGGCCAAGGTAGAGTCTTAGGTTCTTCTTCATCTTCTTCTTCTTCCACACCTGTTAATTCCATTCCTACCTCTCGTCCATCACCCTCTCCCTCTCAGAATCCTAATCCCAAACCTAACCCTAACCCTAATCCTAAACCCACTTCAACGATTGCTTCAAATCCTAGCAGAATCGACAAGCCTCGTAAAACTGGAGATGGGTTTGACCCATTTGATTCTTTGGTCACTTCTTCTCAGAGATCTCAAAATGGGTATACCGTTAATGTATATGAATGCCCCATTTGTAAAACACCCTTTCGATCCGAAGACGAGGTTTCTGAACACGTCGAAAGTTGTTTGAGTAACCCAATTGAGCCTGTTGATAATGATGAAAAATGTGTCTCAAAGAGCGATGAGATTGTTGAGTCTAATACTGAATTGGAGATTTGTATTGGTACTTATGTTTCAGGGAATCCATCTATTGGATCAGTTGATATTGTTCTGAAATTGTTGAGGAATATTGTTAAGGAACCTGAGAACGTTAAGTTTAGGAAAATTAGGTTGAGTAATCCAAAGATTAAAGAAGCTGTTGCTGAGGTTAATGGTGGGATTGAATTGCTTAGTTTTTTAGGTTTTGAGCTTAGGGAGGAGAATGGAGAGACATGGGCAGTGATGGAGGTTCCTGCAGAAGAGAAAATTAAATTGATTAAGAAAGCAATTGTGTTGTTGGAACCACAACTGGTACAAGTTCCTCCAAAGGACAATTTGGTGTCTACAGCTTCGGCTGAGAAAGTAGTCGAGGCCGAACCAGCTGAGCCAAAAAAGATTGACAGACAGGTAAAGGTCTTCTTTGCTGTCGCTGAAAGTGTTGCAGCTAAAATTGAGCTACCAGACTCCTTCTACAAACGTTCAGCTGAAGAGGTGAGAAGAGAAGCTGAACTAAGGAAAAAAAAGTTTGAAGAGTCTCAGCTTTTAATCCCCAAGTCACTTAGAGAAAAGCAAGCTAAAGCTGCAAAGAAGAGATACACAAGAACTGTTATTAGGATTCAGTTTCCAGATGGAGTTGTACTTCAAGGTGTATTTGCTCCATGGGAACCAACTTCTGCTCTCTATGAGTTTGTCAGTTCCGCTATAAAAGAACCAGGTTTGGAATTTGAGCTAATGCATCCTGTTGTTGTTCAACGGCGAGTTATCCCATGTTTTCCAAAAGCAGGGCAAAAGGCCAAAACAATAGAGGAAGAAGACCTGGTACCTTCTGCTCTAATCAAGTTCAAGCCCCTAGAAACAGATTCTGTTGTTTTCACCGGTCTCAAAAATGAATTGCTTGAAATCAGTGAACCACTTGTAAATGGTTAA 1407 0.4058 MDDVKDKVKGFMKKVTSSSSSGKFKGQGRVLGSSSSSSSSTPVNSIPTSRPSPSPSQNPNPKPNPNPNPKPTSTIASNPSRIDKPRKTGDGFDPFDSLVTSSQRSQNGYTVNVYECPICKTPFRSEDEVSEHVESCLSNPIEPVDNDEKCVSKSDEIVESNTELEICIGTYVSGNPSIGSVDIVLKLLRNIVKEPENVKFRKIRLSNPKIKEAVAEVNGGIELLSFLGFELREENGETWAVMEVPAEEKIKLIKKAIVLLEPQLVQVPPKDNLVSTASAEKVVEAEPAEPKKIDRQVKVFFAVAESVAAKIELPDSFYKRSAEEVRREAELRKKKFEESQLLIPKSLREKQAKAAKKRYTRTVIRIQFPDGVVLQGVFAPWEPTSALYEFVSSAIKEPGLEFELMHPVVVQRRVIPCFPKAGQKAKTIEEEDLVPSALIKFKPLETDSVVFTGLKNELLEISEPLVNG 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05781 468 Pfam UBX domain 357 407 IPR001012 GO:0005515
Trre8g05781 468 SUPERFAMILY PUG domain-like 174 258 IPR036339 -
Trre8g05781 468 Gene3D - 176 261 - -
Trre8g05781 468 Gene3D - 351 444 - -
Trre8g05781 468 Pfam PUB domain 180 253 IPR018997 -
Trre8g05781 468 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 467 - -
Trre8g05781 468 MobiDBLite consensus disorder prediction 1 103 - -
Trre8g05781 468 Coils Coil 319 339 - -
Trre8g05781 468 SUPERFAMILY Ubiquitin-like 328 441 IPR029071 -
Trre8g05781 468 CDD PUB 177 261 - -
Trre8g05781 468 MobiDBLite consensus disorder prediction 48 72 - -
Trre8g05781 468 SMART PGNneu 179 246 - -
Trre8g05781 468 FunFam UBX domain-containing protein 6 351 442 - -
Trre8g05781 468 ProSiteProfiles UBX domain profile. 357 441 IPR001012 GO:0005515
Trre8g05781 468 MobiDBLite consensus disorder prediction 13 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05781 Trre-Chr8 58769471 58772063 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05781 1 389 C2H2 Transcription Factor Family AT2G01650 57.286 1.36e-149 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05781 K14011 - gmx:100779271 614.764