Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05763 ATGCACACTCCATTTTCTAATCAAATGGACAAACTCATATTCAATTGTTGCATTGCATACTTTTTCCTTTTCTCTCTCTTTCTTGTGCATGGCAAAGAATTTTCATGCAATCAAACTCCATACCCTCATGTGTGCAACCATTACATTGGTTCCACCACCACAAATACACTATCAACCCTAGATTCTTCTTCTTTCCATGATATGGCTCTTAAGGTTACCATGGACCAAGCCATTGAAGCACACAAACTTGTGTCAACCATGGAATTAAATAACTTCAAAGACAAGAAAGCCAAGTCAGCATGGGAAGATTGTTTAGAGCTTTATGAGGACACAATTTATCAACTCAAACGATCAATAAACTCAAATAATCTAAATGATAAATTAACTTGGCAAAGTGCTTCCATTACAAACCATCAAACTTGTCAAAATGGTTTCATTGATTTCAACCTTCCCTCTCACTTAAACTACTTCCCTTCCATGTTAGGCAACTTCTCTAAATTGCTTAGCAATTCCTTGTCCATTAGCAACACTCTCGCTTCATCATATTCATCCTCATCCTCGTCCTCGTTGTCAAATACTAAACAAAATGGAGGAAGAAAGTTATTGTCAGATGGATTTCCATCTTGGGTTTCAGGTTCAGAGAGAAAATTACTTCAGGCAACAACAGGAGCCGATATCGTAGTGGCACAAGACGGAAGCGGGCACTATAAAACAATCTCCGAAGGTGTAGCCGGAGCTTCTAAACTTAGTGGGAAAGGAAGAGTTATTATTCATGTGAAAGCAGGTGTTTATAAAGAGAATATTGATATCAAGAGGTCAGTGCAAAATTTAATGATATTTGGAGATGGAATGGATTCCACTATTGTCACTGGTAATCAAAATGCTATAGATGGTTCTACAACTTTTCGTTCAGCTACTTTTGCTGTTATGGGAGATGGTTTCATAGCTAAAGACATGACCTTTGAGAACACAGCCGGACCACAAAAACATCAAGCCGTGGCTCTCCGTTCCGGCGCTGACCACTCCGTCTTCTACCGTTGCGCCTTCAAAGGCTACCAAGACACCTTATATGTTTACGCCAACCGTCAATTCTACCGCGACTGCAACGTCTACGGAACAATCGATTTCATCTTCGGTAACGCTGTTTCCGTCCTTCAAAACTCCAACATCTTCATTAGAAAACCAATGGGCTACCAACAGAACACCGTAACGGCGCAGGGGCGTACAGATCCAAATGAAAACACCGGAATCGTGATTCATAACTGTCGCATAACCGCCGCAGGTGATTTGAAAGCGGTTCAGAATTCTATTAAAAGTTATCTTGGTAGACCATGGCAAAAATATTCAAGAACGGTTGTTATGAAAAGTAATATTGATGGTGTGATTAATTCTCAAGGTTGGGCTCCATGGAGTGGTGGATTTGCTTTGAGTACTCTTTATTATGGTGAATATTCGAATGTTGGTGGCGGTGCCGGTACCGGTGGAAGAGTTAATTGGCCTGGTTTTCATGTTATTACTAATCCTTCTGAGGCTGTTAAATTTTCTGTTGGAAATTTTTTGGCTGGTGGTTCTTGGATTTCTGGTAGTGGTGTGCCGTTCGATGCAGGTTTGTGA 1614 0.4058 MHTPFSNQMDKLIFNCCIAYFFLFSLFLVHGKEFSCNQTPYPHVCNHYIGSTTTNTLSTLDSSSFHDMALKVTMDQAIEAHKLVSTMELNNFKDKKAKSAWEDCLELYEDTIYQLKRSINSNNLNDKLTWQSASITNHQTCQNGFIDFNLPSHLNYFPSMLGNFSKLLSNSLSISNTLASSYSSSSSSSLSNTKQNGGRKLLSDGFPSWVSGSERKLLQATTGADIVVAQDGSGHYKTISEGVAGASKLSGKGRVIIHVKAGVYKENIDIKRSVQNLMIFGDGMDSTIVTGNQNAIDGSTTFRSATFAVMGDGFIAKDMTFENTAGPQKHQAVALRSGADHSVFYRCAFKGYQDTLYVYANRQFYRDCNVYGTIDFIFGNAVSVLQNSNIFIRKPMGYQQNTVTAQGRTDPNENTGIVIHNCRITAAGDLKAVQNSIKSYLGRPWQKYSRTVVMKSNIDGVINSQGWAPWSGGFALSTLYYGEYSNVGGGAGTGGRVNWPGFHVITNPSEAVKFSVGNFLAGGSWISGSGVPFDAGL 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05763 537 Pfam Pectinesterase 225 522 IPR000070 GO:0030599|GO:0042545
Trre8g05763 537 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 180 IPR035513 -
Trre8g05763 537 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 178 IPR035513 -
Trre8g05763 537 FunFam Pectinesterase 219 537 - -
Trre8g05763 537 SUPERFAMILY Pectin lyase-like 221 536 IPR011050 -
Trre8g05763 537 Gene3D - 219 537 IPR012334 -
Trre8g05763 537 PANTHER PECTINESTERASE 29 527 - -
Trre8g05763 537 SMART complete 259 440 IPR006633 -
Trre8g05763 537 ProSitePatterns Pectinesterase signature 1. 251 270 IPR018040 -
Trre8g05763 537 NCBIfam pectinesterase inhibitor domain 35 178 IPR006501 GO:0004857
Trre8g05763 537 Pfam Plant invertase/pectin methylesterase inhibitor 35 174 IPR006501 GO:0004857
Trre8g05763 537 CDD PMEI-like_3 35 179 - -
Trre8g05763 537 SMART PMEI_2 29 174 IPR006501 GO:0004857
Trre8g05763 537 ProSitePatterns Pectinesterase signature 2. 370 379 IPR033131 -
Trre8g05763 537 FunFam Pectinesterase 33 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05763 Trre-Chr8 58631169 58633556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05763 12 537 Carbohydrate Esterase AT1G23200 50.454 0.0 541
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05763 - - gmx:100775898 806.208