LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre8g05760	ATGGCTGCAAAACGTTTTTTGGATGATTCTAATCAAGACAAAGATAAACCAAATGATAAACGGATTAGAACTACAACTTCTTTTGCTTCGGTAATAGGAGAAGTGGTTATGGTGAAAAACATGCAAAACCTTTTCTCTGGCTTGGAACCTTTACTTAGAAGAGTGGTGAACGAAGAAGTGGAACGAGCAATAGGACAATGTTATCCACCGCGATCAATAACAAAGTCATCTTCATTGAGACTCAAAGCAGTTGAAGAACCATTAAGTTTTGAATTCGTATTCAAAAAGAAACTTTCACTTCCAATATTCACAGGTAGTAAATTACTAGACATGGATGGAAAATCAATCAATGTGATTCTTGTTGACAAAAGCAATGGCCAAGAAGTCCCTACAAGTCTACCTCACCCAATCAAGATTGAAATTGTAGTTCTTGATGGAGATTTTCCATCTAATGAAAAGGAATCATCATGGACTAGTGAAGAATTCAATAGTAATATTGTGAAAGAGAGAACTGGGAAGAGGCCATTGCTTACAGGAGAATTGAATCTTACCATGAGAGATGGAATTGCACCAATTGGAGATATTGAGTTCACCGATAATTCTAGCTGGATTCGTAGTAGAAAGTTTAGAGTTGCTGCTAGAATTGCGCCTGGGACTAATCAAAGTGTTCGTATTCGTGAAGGCATGACCGAACCTTTTGTTGTTAAGGATCATCGTGGTGAATTGTACAAGAAACACCATCCACCAAATCTAAAGGACGAAGTGTGGAGGCTAGAGAAGATTGGAAAAGATGGAGCTTTCCACAAAAAATTGACCAAAGAAGGAATTACTACCGTACAAGAGTTTCTCAAGTTATCTGTTGTTGACCCTCTTAGGCTAAGAAAGATTTTAGGAATTGGGATGTCAGAGAAAATGTGGGAAGTGACAATTAAGCATGCAAATACTTGTGTAATGGGAAACAAACTATATGTCTACCGTGTGCCTCAAGTTACCATATATCTCAATGCCATATGCCAAATGGTTAAAGCTTATGTCAACGGTCAAATTATTCCCAACCGAGACATGCCCAACATGAACAAGCAGGGATACATAGAAAAATTGGTGAGAGAAGCATATGCTAGATGGAATGAGTTGGAGGAAATTGATGAAGTTTTGAATGATAATGTTGCTTTGTTAACTCAAGGTGAAACTGTGGAACAATTTCAAAACAATAATAATCATCAAGCACCGGTTATAGCATATGATCAAAATGACTTTTTTGGTGATAAATCTCTAGAGGGTGGAAACTATGTAGCAAGCCATAATAATAATGCACAAATAGGTGGCATCCAGTGGTCACCACCATTTCCCACTTCACCATTCATGAATGCCATATCTTATAGCTTCACAGATTCACAATCAGATGATGGTGATATAACCCCTTCAACTTCAGTACCAGTTATTGATGGAGCTTCAAGGTGGCTTTAA	1467	0.377	MAAKRFLDDSNQDKDKPNDKRIRTTTSFASVIGEVVMVKNMQNLFSGLEPLLRRVVNEEVERAIGQCYPPRSITKSSSLRLKAVEEPLSFEFVFKKKLSLPIFTGSKLLDMDGKSINVILVDKSNGQEVPTSLPHPIKIEIVVLDGDFPSNEKESSWTSEEFNSNIVKERTGKRPLLTGELNLTMRDGIAPIGDIEFTDNSSWIRSRKFRVAARIAPGTNQSVRIREGMTEPFVVKDHRGELYKKHHPPNLKDEVWRLEKIGKDGAFHKKLTKEGITTVQEFLKLSVVDPLRLRKILGIGMSEKMWEVTIKHANTCVMGNKLYVYRVPQVTIYLNAICQMVKAYVNGQIIPNRDMPNMNKQGYIEKLVREAYARWNELEEIDEVLNDNVALLTQGETVEQFQNNNNHQAPVIAYDQNDFFGDKSLEGGNYVASHNNNAQIGGIQWSPPFPTSPFMNAISYSFTDSQSDDGDITPSTSVPVIDGASRWL	488

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre8g05760	488	PANTHER	OS02G0177800 PROTEIN	1	439	IPR012416	GO:0005516
	Trre8g05760	488	Pfam	Calmodulin binding protein-like N-terminal domain	91	238	IPR046831	-
	Trre8g05760	488	MobiDBLite	consensus disorder prediction	1	20	-	-
	Trre8g05760	488	Pfam	Calmodulin binding protein central domain	251	316	IPR046830	-
	Trre8g05760	488	Pfam	Calmodulin binding protein C-terminal domain	321	381	IPR046829	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre8g05760	Trre-Chr8	58594690	58597122	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre8g05760	3	382	Calmodulin-binding Proteins	AT5G57580	49.351	3.49e-118	359

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre8g05760	-		-	gmx:100802257	657.521