Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05754 ATGGCGACGCCATTGGATTGCGTAGGAGGAGGAGGTGTGGCGATTCTCTCCAATTCAACCAACAAAGTCGATTCCTCTTCATCTCTCAATGCTTCTTTAAAGTGCTCCAAACTCGACTCGCCAATTTTGATTTTCTTGTTCTTTCATAAAGCGATTCGGAATGAACTTGATACTTTACACAGATTAGCCATGGCATTTGCTACCGGTAATCGCTCCGATATTCAGCCACTCTTCGACCGTTATCATTTCCTCAGCTCTATTTATAGACACCACTCCAATGCTGAAGATGAGGTGATTTTTCCCGCTCTAGACAGACGTGTGAAGAATGTAGCACAGACATATTCTCTTGAGCACAAGGGTGAAAGCAATCTTTTTGATCATCTATTTGAGCTGTTAAATTCTTCTATCAAGAATGATGAGAGTTTTCCAAGAGAATTAGCATCTTGCACAGGAGCATTACAAACATCAGTTAGTCAACACTTGGCAAAGGAAGAGGAACAGGTATTTCCTCTGCTTATTGAGAAGTTCTCTCTCGAGGAACAAGCATCCTTAGTTTGGCAGTTTCTTTGCAGTATTCCTGTGAATATGATGGCAGAATTTCTTCCCTGGCTTTCAACATCTATATCAGCTGATGAATCTCAGGATTTACGAGATTTCTTAATCAAAATTGTGCCAGAGGAAAGGCTTCTTCAAAAGGTTGTTTTCACCTGGATGGAAGGGAGAAGTAGTGTTAACACAATTCAAAGTAGTGCAGTTCATTCTCAAGTTCAATGTTATTCTAGCCCATTAACCCATCAGGTTGGAAGAGTAAATTGTGTATGCGAGTCCACAACAACTGGAAAAAGGAAACATTCTGGATCTATGCTAGATGTTTCTGATGCCACTAGGACACATCCTATAGATGAGATATTGCTCTGGCATAATGCAATAAAAAAAGAGTTAAGTGAGATAGCAGTGGAGACCAGAAGAATACAACACTCTGGAGATTTTACCGACATATCAGCCTTTAATGACAGACTGCAATTCATTGCTGATGTTTGCATATTTCATAGTATTGCTGAGGACAAAGTTATTTTTCCAGCGGTAGATGGAGAATTTTCTTTCTTTCAGGAGCATGCTGAAGAAGAAAGCCAATTTAATGACTTTCGGTGTTTGATTGAAAGTATTCTAAGTGAAGGAGCATCATCTAATTCAGAAGTTGAATTTTATTCCAAGTTATGCTCACATGCCGATCATATAATGGAAACCATACAGAGGCATTTCCATAATGAAGAAGTTCAGGTTCTTCCACTTGCAAGAAAGCACTTTAGCTTTAGAAGACAATGTGAACTTCTGTATCAAAGCTTATGTATGATGCCTCTGAAATTGATTGAGAGAGTCCTACCATGGTTGGTAGGATCTTTAACTGAAGAAGAAGCAAAGATGTTTCTGAGAAACATGCAATTTGCAGCTCCAGCAACAGATTCTGCTCTGGTCACACTCTTCAGTGGTTGGGCATGCAAAGCTCGTAATGAAGGCCTGTGTTTGTCTTCAGGCACATCAGTTTGCTGCCCTGCTCAAAGACTTTCTGATATTGAAGAAAACATTGATCAGCCATCCTGTGTTTGTATCACAGCATCATCTGACAGACATTGTTCAGTAATATTTGAGTCAGATGGCAACAAAAGACCAGTCAAGCGAAACACATTGAAGTTGAACAATGGAGATGTAACTTCAGAGACTGAAAGTACCCAGAAACAGTGCTGTAGTCCCCGGCCCTGTTGTGTGCCAGGTTTAGGAGTAAACAGTAACACTTTGGGGCTTAGTTCAATTTCTACAGCCAAGTCTTTACGCTCCTTGTCTTTCAGCTCTTCTGCTCCATATCTTAATTCCAGTCTTTTCATATGGGAAACAGAGAGCAGCTCATGTGACGTTAGCTCTGCAGAAAGACCAATTGATACCATATTTAAATTCCATAAAGCTATACGTAAAGACTTGGAGTATCTAGATGTTGAATCTGGAAAGCTGAGTGGTAGTAACGAGACAATTATTCGGCAATTTAGTGGAAGATTTCGTCTTTTGTGGGGTTTATATAGAGCTCATAGTAATGCAGAAGATGATATAGTATTTCCAGCATTAGAATCCAAAGAGGCCCTTCACAATGTGAGCCATTCATACATGTTGGACCATAAGCAGGAAGAACAATTGTTTGAAGATATTTCCTGCGTTCTTTCTGAGTTTTCTGTCCTTCATGAAGCCTTGCAGTTGCTCCATATGGCAGAGGATTTGAGTGACAGTAATTTTGGAACTTCTGATGCCAATGACAGTGATGATGTCAAGAAGTATAACGAACTTGCAACAAAGCTTCAGGGGATGTGCAAATCCATAAGAGTGACCCTGGATCAGCATATTTTCAGGGAAGAGCGTGAACTGTGGCCATTGTTTGGAAAACATTTCACTGTGGAAGAACAAGATAAGATAGTAGGCCGGATAATTGGAACTACTGGTGCTGAAGTTCTCCAGTCAATGTTACCGTGGGTAACTTCTGCACTTACTCAGGATGAACAGAATAAAATGATGGATACATGGAAGCAGGCAACTAAGAATACCATGTTCAATGAATGGCTTAATGAATGCTGGAAAGAGAGTCCAGAATCTATAGCACGGACAGAAACATCACATAGTAGCACTTCTCATAAAGGACCTGAGTATCAGGAATGCTTGGACCTCAATGATCAAATGTTCAAGCCAGGTTGGAAAGACATTTTCCGGATGAATCAGAATGAACTTGAGTCAGAGATCCGGAAGGTTTATCGTGACTCAACTCTTGATCCAAGGAGAAAGGCATATCTTGTGCAAAATCTTTTGACAAGTCGTTGGATAGCTGCCCAGCAGAAATCACCTAAAGCTTCATCTGAAGGATCATCTAATGGTGTCGAAATAGAAGGACACTCACCATCATTTCGGGACCTAGGGAAACTTGTATTTGGGTGTGAGCACTACAAGAGAAATTGCAAGCTTCGAGCTGCATGTTGTGGCAAGTTATTTACTTGCAGATTTTGTCATGACAATGTGAGCGATCACTCAATGGATAGAAAAGCAACATCAGAAATGATGTGTATGCGCTGCCTGAATATACAGCCAATTGGGCCTATATGCATGACACCTTCATGTAATGCACTTTCAATGGCAAAGTACTATTGCAGTATATGCAAATTCTTTGATGATGAAAGGAATGTATACCATTGCCCATTTTGTAATTTATGCCGTGTTGGACGAGGGCTTGGAATTGATTATTTTCATTGCATGAAATGCAATTGCTGCCTGGGGATTAAATCGTCATCTCATAAATGCCTGGAGAAAGGTTTAGAAATGAACTGCCCAATTTGCTGTGATGACCTGTTCACTTCAAGTGCTACAGTCAGAGCTCTGCCTTGTGGTCACTACATGCATTCTGCTTGTTTTCAGGCATACACTAGTAGTCACTACACGTGTCCAATCTGCAGCAAGTCATTGGGAGATATGGCGGTTTACTTTGGTATGCTCGATGCCTTATTGGCTGCAGAGGAGCTCCCTGAAGAGTATAGGGACCGCCATCAGGACATACTTTGCAATGACTGTGATCGAAAGGGCACTTCACGCTTCCATTGGCTGTATCACAAATGTGGATCTTGTGGCTCTTACAATACTCGGCTGATCAAGCGTGAGACACATTCCAGCAGCTCTTAG 3708 0.4102 MATPLDCVGGGGVAILSNSTNKVDSSSSLNASLKCSKLDSPILIFLFFHKAIRNELDTLHRLAMAFATGNRSDIQPLFDRYHFLSSIYRHHSNAEDEVIFPALDRRVKNVAQTYSLEHKGESNLFDHLFELLNSSIKNDESFPRELASCTGALQTSVSQHLAKEEEQVFPLLIEKFSLEEQASLVWQFLCSIPVNMMAEFLPWLSTSISADESQDLRDFLIKIVPEERLLQKVVFTWMEGRSSVNTIQSSAVHSQVQCYSSPLTHQVGRVNCVCESTTTGKRKHSGSMLDVSDATRTHPIDEILLWHNAIKKELSEIAVETRRIQHSGDFTDISAFNDRLQFIADVCIFHSIAEDKVIFPAVDGEFSFFQEHAEEESQFNDFRCLIESILSEGASSNSEVEFYSKLCSHADHIMETIQRHFHNEEVQVLPLARKHFSFRRQCELLYQSLCMMPLKLIERVLPWLVGSLTEEEAKMFLRNMQFAAPATDSALVTLFSGWACKARNEGLCLSSGTSVCCPAQRLSDIEENIDQPSCVCITASSDRHCSVIFESDGNKRPVKRNTLKLNNGDVTSETESTQKQCCSPRPCCVPGLGVNSNTLGLSSISTAKSLRSLSFSSSAPYLNSSLFIWETESSSCDVSSAERPIDTIFKFHKAIRKDLEYLDVESGKLSGSNETIIRQFSGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYMLDHKQEEQLFEDISCVLSEFSVLHEALQLLHMAEDLSDSNFGTSDANDSDDVKKYNELATKLQGMCKSIRVTLDQHIFREERELWPLFGKHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMMDTWKQATKNTMFNEWLNECWKESPESIARTETSHSSTSHKGPEYQECLDLNDQMFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKAYLVQNLLTSRWIAAQQKSPKASSEGSSNGVEIEGHSPSFRDLGKLVFGCEHYKRNCKLRAACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMRCLNIQPIGPICMTPSCNALSMAKYYCSICKFFDDERNVYHCPFCNLCRVGRGLGIDYFHCMKCNCCLGIKSSSHKCLEKGLEMNCPICCDDLFTSSATVRALPCGHYMHSACFQAYTSSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRHQDILCNDCDRKGTSRFHWLYHKCGSCGSYNTRLIKRETHSSSS 1235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05754 1235 SMART ring_2 1120 1161 IPR001841 -
Trre8g05754 1235 FunFam RING finger and CHY zinc finger domain-containing protein 1 1190 1234 - -
Trre8g05754 1235 SUPERFAMILY RING/U-box 1117 1172 - -
Trre8g05754 1235 SUPERFAMILY CHY zinc finger-like 987 1047 IPR037274 GO:0008270
Trre8g05754 1235 CDD Hr-like 301 430 - -
Trre8g05754 1235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1116 1164 IPR013083 -
Trre8g05754 1235 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 687 1232 - -
Trre8g05754 1235 Gene3D nmb1532 protein domain like 639 883 - -
Trre8g05754 1235 ProSiteProfiles Zinc finger CTCHY-type profile. 1056 1119 IPR017921 -
Trre8g05754 1235 ProSiteProfiles Zinc finger RING-type profile. 1120 1162 IPR001841 -
Trre8g05754 1235 FunFam Zinc finger protein-related isoform 1 1115 1164 - -
Trre8g05754 1235 Pfam CHY zinc finger 991 1066 IPR008913 GO:0008270
Trre8g05754 1235 CDD Hr-like 646 806 - -
Trre8g05754 1235 Pfam Hemerythrin HHE cation binding domain 298 432 IPR012312 -
Trre8g05754 1235 Pfam Hemerythrin HHE cation binding domain 644 807 IPR012312 -
Trre8g05754 1235 Pfam Hemerythrin HHE cation binding domain 46 172 IPR012312 -
Trre8g05754 1235 Gene3D nmb1532 protein domain like 38 190 - -
Trre8g05754 1235 Gene3D nmb1532 protein domain like 300 448 - -
Trre8g05754 1235 Pfam Ring finger domain 1119 1161 IPR001841 -
Trre8g05754 1235 Pfam Zinc-ribbon 1167 1224 IPR039512 -
Trre8g05754 1235 CDD Hr-like 44 170 - -
Trre8g05754 1235 Gene3D - 1191 1232 - -
Trre8g05754 1235 ProSiteProfiles Zinc finger CHY-type profile. 984 1053 IPR008913 GO:0008270
Trre8g05754 1235 CDD RING-H2_Pirh2-like 1119 1162 - -
Trre8g05754 1235 SUPERFAMILY Zinc hairpin stack 1057 1113 IPR037275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05754 Trre-Chr8 58530882 58539431 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05754 1 1230 C2H2 Transcription Factor Family AT3G18290 67.170 0.0 1677