Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05738 ATGAAAAGTGATGCAGATGCAGGTGCCTTGGGTGCCAAGACAGCAAGAGCATGTGATAGCTGTTTAAGAAGAAGAGCACGTTGGTTTTGTGCTGCAGATGATGCTTTTCTTTGTCATGGTTGTGACAATTTAGTTCATTCAGCTAATCAATTAGCAAGTAGACACGAAAGGGTTCGTCTACAAACCGCGTCTGCTAAGGTAGTAACAACTACAGGACAAGCATGGCACAGTGGATTCACAAGAAAAGCAAGAACTCCACGCCATAACAAAAATTCGTCGATTCAACAACAACAGCAACGTCTCAAGGAGAAAGTTCTTTTCAATACTAGTTTTCTTCCACTTGTTCCTGAGCTCGGTGGCGAAGAAGAACAAGGACAAGAATTACTTGTCGATATTGATGAGGCCGAGGAGGAGAATTTGATTTTTCGAGTACCGGTTTTTGATGTTGATCCTTTTGATTTAGAGAATTGTAATGTGAAAAATGATGGGGCTGATTTTGAGGAAATGTGTGACTTGGATAGTTTTTGTGAATTTGATGTTGATCTTGCTGAATTTGCAGCTAATGTTGAAAGCTTACTTGGTGTTGGAAGTAATAATGAGAATTCATCAGGACAAGTTTTTGATTATAAACAAGAAAATGAAATGGATGCATCTAAAAATGAAGTGTTGAAAGTTAAAGATGAAGAACTTGATGATTTGGAATCAGTTTTTGATATGACAAGTGATGAAGTTTTTCATTGGAATTTTGATAATAATAATGAATCATTAGGACATCATCAAGAGAAAGAGTTTGTGATGGTGAGTAATAATAGTGAGAGTGTTATTACTAAAGAAGAAGAAACAAAGAGAGAGAGATTTTTGAGACTAAACTATGAAGAGGTTATTAGTGCTTGGAGCAGACAAGGTTCTCCTTCTCCATGGACTACTGGAAATCCTCCTAAGTTCAATTCTGATGATGATTCATGGCAAAACTTCTTGGGTTCAAGTGGTGTAGAAGGAGAAGTGAGAAGCTTAAGGGGACAATTAATGGGAAGTAATGGAGATGGAGGAAGAGAAGCAAGAGTATCAAGGTATAGAGAGAAAAGAAGAACACGTTTGTTTGCAAAGAAAATAAGATATGAAGTAAGGAAATTGAATGCAGAGAAGAGACCAAGAATGAAAGGTCGATTTGTTAAAAGAACATCATGTTTTGTTGGAGGAGGAGGAGGAGGAGCTACTACTTTTCCCACAAATTACCACTAA 1242 0.3736 MKSDADAGALGAKTARACDSCLRRRARWFCAADDAFLCHGCDNLVHSANQLASRHERVRLQTASAKVVTTTGQAWHSGFTRKARTPRHNKNSSIQQQQQRLKEKVLFNTSFLPLVPELGGEEEQGQELLVDIDEAEEENLIFRVPVFDVDPFDLENCNVKNDGADFEEMCDLDSFCEFDVDLAEFAANVESLLGVGSNNENSSGQVFDYKQENEMDASKNEVLKVKDEELDDLESVFDMTSDEVFHWNFDNNNESLGHHQEKEFVMVSNNSESVITKEEETKRERFLRLNYEEVISAWSRQGSPSPWTTGNPPKFNSDDDSWQNFLGSSGVEGEVRSLRGQLMGSNGDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTSCFVGGGGGGATTFPTNYH 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05738 413 ProSiteProfiles CCT domain profile. 351 393 IPR010402 GO:0005515
Trre8g05738 413 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 7 395 - -
Trre8g05738 413 CDD Bbox1_BBX-like 17 60 - -
Trre8g05738 413 Pfam CCT motif 351 393 IPR010402 GO:0005515
Trre8g05738 413 Pfam B-box zinc finger 15 58 IPR000315 GO:0008270
Trre8g05738 413 Coils Coil 118 138 - -
Trre8g05738 413 SMART bboxneu5 13 60 IPR000315 GO:0008270
Trre8g05738 413 ProSiteProfiles Zinc finger B-box type profile. 13 60 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05738 Trre-Chr8 58446428 58448139 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05738 7 393 C2C2-CO-like Transcription Factor Family AT1G25440 44.084 2.47e-89 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Trre8g05738 zf-B_box 4.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05738 - - adu:107478728 412.149