Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05737 ATGATCAAAGACATGAAAAGTGATGCAGATGCAGGTGCCTTGGGTGCCAAGACAGCAAGAGCATGTGATAGCTGTTTAAGAAGAAGAGCACGTTGGTTTTGTGCTGCAGATGATGCTTTTCTTTGTCATGGTTGTGACAATTTAGTTCATTCAGCTAATCAATTAGCAAGTAGACACGAAAGGGTTCGTCTACAAACCGCGTCTGCTAAGGTAGTAACAACTACAGGACAAGCATGGCACAGTGGATTCACAAGAAAAGCAAGAACTCCACGCCATAACAAAAATTCGTCGATTCAACAACAACAGCAACGTCTCAAGGAGAAAGTTCTTTTCAATACTAGTTTTCTTCCACTTGTTCCTGAGCTCGGTGGCGAAGAAGAACAAGGACAAGAATTACTTGTCGATATTGATGAGGCCGAGGAGGAGAATTTGATTTTTCGAGTACCGGTTTTTGATGTTGATCCTTTTGATTTAGAGAATTGTAATGTGAAAAATGATGGGGCTGATTTTGAGGAAATGTGTGACTTGGATAGTTTTTGTGAATTTGATGTTGATCTTGCTGAATTTGCAGCTAATGTTGAAAGCTTACTTGGTGTTGGAAGTAATAATGAGAATTCATCAGGACAAGTTTTTGATTATAAACAAGAAAATGAAATGGATGCATCTAAAAATGAAGTGTTGAAAGTTAAAGATGAAGAACTTGATGATTTGGAATCAGTTTTTGATATGACAAGTGATGAAGTTTTTCATTGGAATTTTGATAATAATAATGAATCATTAGGACATCATCAAGAGAAAGAGTTTGTGATGGTGAGTAATAATAGTGAGAGTGTTATTACTAAAGAAGAAGAAACAAAGAGAGAGAGATTTTTGAGACTAAACTATGAAGAGGTTATTAGTGCTTGGAGCAGACAAGGTTCTCCTTCTCCATGGACTACTGGAAATCCTCCTAAGTTCAATTCTGATGATGATTCATGGCAAAACTTCTTGGGTTCAAGTGGTGTAGAAGGAGAAGTGAGAAGCTTAAGGGGACAATTAATGGGAAGTAATGGAGATGGAGGAAGAGAAGCAAGAGTATCAAGGTATAGAGAGAAAAGAAGAACACGTTTGTTTGCAAAGAAAATAAGATATGAAGTAAGGAAATTGAATGCAGAGAAGAGACCAAGAATGAAAGGTCGATTTGTTAAAAGAACATCATGTTTTGTTGGAGGAGGAGGAGGAGGAGCTACTACTTTTCCCACAAATTACCACTAA 1254 0.3732 MIKDMKSDADAGALGAKTARACDSCLRRRARWFCAADDAFLCHGCDNLVHSANQLASRHERVRLQTASAKVVTTTGQAWHSGFTRKARTPRHNKNSSIQQQQQRLKEKVLFNTSFLPLVPELGGEEEQGQELLVDIDEAEEENLIFRVPVFDVDPFDLENCNVKNDGADFEEMCDLDSFCEFDVDLAEFAANVESLLGVGSNNENSSGQVFDYKQENEMDASKNEVLKVKDEELDDLESVFDMTSDEVFHWNFDNNNESLGHHQEKEFVMVSNNSESVITKEEETKRERFLRLNYEEVISAWSRQGSPSPWTTGNPPKFNSDDDSWQNFLGSSGVEGEVRSLRGQLMGSNGDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTSCFVGGGGGGATTFPTNYH 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05737 417 SMART bboxneu5 17 64 IPR000315 GO:0008270
Trre8g05737 417 CDD Bbox1_BBX-like 21 64 - -
Trre8g05737 417 Pfam B-box zinc finger 19 62 IPR000315 GO:0008270
Trre8g05737 417 ProSiteProfiles Zinc finger B-box type profile. 17 64 IPR000315 GO:0008270
Trre8g05737 417 Pfam CCT motif 355 397 IPR010402 GO:0005515
Trre8g05737 417 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 11 399 - -
Trre8g05737 417 Coils Coil 122 142 - -
Trre8g05737 417 ProSiteProfiles CCT domain profile. 355 397 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05737 Trre-Chr8 58446416 58448139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05737 11 397 C2C2-CO-like Transcription Factor Family AT1G25440 43.953 4.23e-89 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Trre8g05737 zf-B_box 4.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05737 - - adu:107478728 412.92