Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05735 ATGGTTAAGCGAAGTTTTACTAATGAAAAAGGCAAACTTCCAAAAAATAAGATTGTGCATATCAATGGAAGAGAGGAAAAAGTTTATCTGAAAGACACAGATCGAAAAAAGACTTTAACTAGTGAGTACAAAGGTGTTCGCCGTAGAAAATGGGGAACATTTGCTGCAGAAATTCAAGATCCTTTCGCCAAAAAAAGATTGTGGCTTGGAAGTTTTGAAAGAGAAGAAATAGCTGCTGTGGCGTATAGTAAAAAATTTGACGAGTTTGAGAGGAGAAAAGCTGAATCTGCATCAAGGGATAATGTGGATCTTAATCAACCATGCAAGGAGCATTTTAATAACTACGGTGAACCTCCCTCTTATGATGATGATAACTTTGGTGGTAATTCATCAAATCAGATTCATTTAGGTGTTGAAATCAGATGA 426 0.3592 MVKRSFTNEKGKLPKNKIVHINGREEKVYLKDTDRKKTLTSEYKGVRRRKWGTFAAEIQDPFAKKRLWLGSFEREEIAAVAYSKKFDEFERRKAESASRDNVDLNQPCKEHFNNYGEPPSYDDDNFGGNSSNQIHLGVEIR 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05735 141 ProSiteProfiles AP2/ERF domain profile. 42 107 IPR001471 GO:0003700|GO:0006355
Trre8g05735 141 SMART rav1_2 42 109 IPR001471 GO:0003700|GO:0006355
Trre8g05735 141 MobiDBLite consensus disorder prediction 94 128 - -
Trre8g05735 141 SUPERFAMILY DNA-binding domain 41 89 IPR016177 GO:0003677
Trre8g05735 141 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 32 95 - -
Trre8g05735 141 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Trre8g05735 141 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Trre8g05735 141 CDD AP2 41 94 IPR001471 GO:0003700|GO:0006355
Trre8g05735 141 Gene3D AP2/ERF domain 42 105 IPR036955 GO:0003700|GO:0006355
Trre8g05735 141 Pfam AP2 domain 42 82 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05735 Trre-Chr8 58415600 58416025 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05735 40 108 AP2-EREBP Transcription Factor Family AT1G49120 57.143 1.16e-17 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre8g05735 AP2 2.6e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05735 - - tpra:123913595 208.379