Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05717 ATGGATTTAGAAGAGAAGTTTCTTGCTAAAGTTTCTGGTGTTCAAAGCCTTTCTTCCAGTGTGCAAAGTACTCCTGAAAAAAATGGCCATTCAGATGATGCTTCAAGAAGTTCAGAACTCTTTCAGGAGTACATGAAATATGGTCCAAAGAAGGAACTTCTTCAAACGTGCTTTGATAAGGACAAAAAGAACATGTCTTCAAAAAACAGGATGACTGAAGCCAAGTCATCTGGTAAGACAATTAAGAAACAAGACACAAAAAAGGCTTCGAGTCTTAATCGTCAGCCCTCAAAAAAGCAACATCGGAAGAGTGAAAACCCCATCCAACTCGTACCTCCTTCTAACCAGGCTTCTGATTTTGGACATCCGAGCACTTGGATCTGTAAAAATGCTGCTTGTAGGGCGGTTCTATCAGTGGATGACACATTTTGTAGACGGTGTTCTTGTTGTATCTGTCACCTTTTTGATGATAACAAGGATCCTAGTCTTTGGTTGGTATGCACATCTGAATCTACTCAAGGGGACTCCTGTGGGCTGTCTTGCCACATCGAATGTGCCCTTCAACATGAAAAAGTGGGAGTTGTTGATCATGGACAACTGATGCAACTGGATGGTGGTTATTGTTGTGCATCCTGTGGTAAAGTTACTGGGATACTTGGATGCTGGAAGAAACAACTGAATATTGCAAAAGATGCCCGGCGTGTAGATGTGCTGTGTTATAGGATATATTTGAGCTACAGGCTCCTGAATGGAACTTCAAAATTTGAAGACCTGCATCAAATGATACAGGAGGCAAAGGCTAAACTGGAGACAGAAGTTGGTCCTCTTGATGGAGTTTCTGCCAAAATGGCACGAGGCATCGTCAGTAGACTCCCGGTTGCCAGTGATGTGCAGAGACTCTGCACTCTTGCTATTGAAAAAGCTGACAGCTGGCTGGCCAATGTTCCCAATTTAAATTCAGAGGGTTCACTTCCTGCTGCTTGCAAATTTGTTTTTGAAGAGGTAACAGCTTCCTCTGTCAAAATCATTTTAATCGAAATGTCAAATATATGTTCTGAGGACATCAAGGGGTACAAGCTCTGGTATTACAAGAGTCGGGATGAACCACCTACAAAGGATCCTGTTTCTGTGTTTCCCAAATCTCAGAGGAGGATTTTGATATCTGACCTTCAACCTTGCACAGAATATACTTTTCGGATTATATCTTACACTGCCATGGGTGACCTGGGTCATTCTGAGGCTAAGTGTTTCACTGAGAGCGTTGAGATAATTAGAAACAATGCCTCTAAGTCGGTTGCTTCAAATCATAAAAAGCTGAACCCTCAAACCGAGGGCAATTCTTCTGGCTCCACGATGGAGCTCAATCCTGCAATGACAGGCCCCAGATTTAAGGTTCGAGACCTTGGGAAAATTTTGCGCCTTGCTTGGGCTCAAGAACGTGGTTACTTTGAGGAGTTTTGCTGTGCTGATATGAAAAATTGCTGTGGACAAGGCAAAACGAAGAAGCCTAAAATTCCAGAAATGCGGTTGCCTTCAGATTCACGGGGCCTTGATTTAAATGTTGTATCGGTCCCTGATTTGAATGAAGACCTAACACCTCCTTTTGAGTCTTCCAGGGATGAAGGTATTGGTTGCACTTTACTGCAGGCTGTTGAGGCAGATGATGATGCTGTTTCTCATGATCTACAGGAAAACGATAAAGCAAGATCACATAGGAGTGGCGACTCACAAACCTGGGCACATGGGCCAAGAGAAGTCTCAACTGTTGGCTCTCGTGTAAATGCAGGCAGGAAAAGGGTTGCGAGCACAAATGAAGAGGCACATGATTGCGATAGTACTTTGATAAATGGTTCTCCTTTACGTATACCTGGTGGTTCCCGTTCCTTGGATGAAAACTTCGAGTATTGTGTGAAGGTTATCCGTTGGCTAGAGTGCGAGGGCCACATCAAACATGAATTTAGGTTGAAATTGCTAACATGGTTTAGTTTGAGATCGACAGAGCAGGAACGCAGGGTTGTAAATACCTTTATTCAAACTCTTATGGATGATCCAAGTAGTTTGGCAGGGCAACTGGTTGACTCTTTCTCTGATGTTGTATCCAGCAAGAAGAGGCCAAGAAATGGACTCAATAGTAAAGCTGGAGCATCAAAATAA 2154 0.4313 MDLEEKFLAKVSGVQSLSSSVQSTPEKNGHSDDASRSSELFQEYMKYGPKKELLQTCFDKDKKNMSSKNRMTEAKSSGKTIKKQDTKKASSLNRQPSKKQHRKSENPIQLVPPSNQASDFGHPSTWICKNAACRAVLSVDDTFCRRCSCCICHLFDDNKDPSLWLVCTSESTQGDSCGLSCHIECALQHEKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLNIAKDARRVDVLCYRIYLSYRLLNGTSKFEDLHQMIQEAKAKLETEVGPLDGVSAKMARGIVSRLPVASDVQRLCTLAIEKADSWLANVPNLNSEGSLPAACKFVFEEVTASSVKIILIEMSNICSEDIKGYKLWYYKSRDEPPTKDPVSVFPKSQRRILISDLQPCTEYTFRIISYTAMGDLGHSEAKCFTESVEIIRNNASKSVASNHKKLNPQTEGNSSGSTMELNPAMTGPRFKVRDLGKILRLAWAQERGYFEEFCCADMKNCCGQGKTKKPKIPEMRLPSDSRGLDLNVVSVPDLNEDLTPPFESSRDEGIGCTLLQAVEADDDAVSHDLQENDKARSHRSGDSQTWAHGPREVSTVGSRVNAGRKRVASTNEEAHDCDSTLINGSPLRIPGGSRSLDENFEYCVKVIRWLECEGHIKHEFRLKLLTWFSLRSTEQERRVVNTFIQTLMDDPSSLAGQLVDSFSDVVSSKKRPRNGLNSKAGASK 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05717 717 MobiDBLite consensus disorder prediction 560 574 - -
Trre8g05717 717 MobiDBLite consensus disorder prediction 58 114 - -
Trre8g05717 717 MobiDBLite consensus disorder prediction 11 41 - -
Trre8g05717 717 SUPERFAMILY Fibronectin type III 330 408 IPR036116 GO:0005515
Trre8g05717 717 MobiDBLite consensus disorder prediction 432 458 - -
Trre8g05717 717 MobiDBLite consensus disorder prediction 58 89 - -
Trre8g05717 717 ProSiteProfiles Fibronectin type-III domain profile. 324 423 IPR003961 GO:0005515
Trre8g05717 717 Pfam PHD - plant homeodomain finger protein 128 246 IPR032881 -
Trre8g05717 717 MobiDBLite consensus disorder prediction 432 455 - -
Trre8g05717 717 CDD FN3 329 408 IPR003961 GO:0005515
Trre8g05717 717 Gene3D Immunoglobulins 325 422 IPR013783 -
Trre8g05717 717 MobiDBLite consensus disorder prediction 560 592 - -
Trre8g05717 717 Pfam Fibronectin type III domain 330 410 IPR003961 GO:0005515
Trre8g05717 717 PANTHER VIN3-LIKE PROTEIN 2-RELATED 17 712 IPR044514 GO:0010048|GO:0040029
Trre8g05717 717 MobiDBLite consensus disorder prediction 12 28 - -
Trre8g05717 717 CDD PHD_VIN3_plant 148 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05717 Trre-Chr8 58275707 58282285 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05717 86 709 PHD Gene Family AT3G24440 48.189 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05717 - - tpra:123915437 1354.73