Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05714 ATGAGTCGAATAAAGGAAGATGAGAAAAATGAACGAATTATTCGAGGTCTTCTCAAACTGACACCGAATCGAAGATGCATTAACTGCAACAGTATGGGACCACAATATGTATGCACAAATTTTTGGACGTTTGTTTGCACAAACTGCAGTGGAATACACCGGGAATTTACTCATCGAGTAAAATCAATATCCATGGCTAAATTTACTGCACAAGAAGTTAGTGCACTTCAAGAAGGAGGAAATCAGCGTGCAAAAGAAACATTTTTTAAAGAATGGGATCCACAAAGTAATTCTTTACCTGATAGCAGTAATGTTGACAGGCTACGGGACTTTATCAAGCATGTTTATGTGGATAGGAGATTCACTGGCGAGAGGTCCTATGACAAACCTCCAAGAGTAAAGGGCGACAAGGATGATTCCTATGAAAACAGGAGGCTGGAAACATATCAGGGAGGACCTAAAAGCCCTCCGTATGAGGACACATATGAACGCCGTTACAGTGACAGATCTAGTCCAGGTGGAAGAAGTCCTGGATATGATCAAGAAAGGCATTATGCCGATAATAAGAGAAGCCCAGGTCGCCCTCCAATAATCAATGATTGGCGTCGTGAAGATAGATTTGGGGGTGGACAGAAATTTGAAGACCGTAGAATATCTGATGGAGGTAATAAGATGGAAAGCCAATCTCCCGAGCGAGCCAAAGACCTGGATTCTTCAAGTCCACCACCTGTTGTCCGACCTGTTAGAGAAATTCTGGGAGAAAATGTAGTACCTCTACGAATTAGTGAACCTCCCAAAGCAAACAGTGGACAGGCTGCTAATGGCTCAGCACTCACACAGAGAACGGCATCTTCCAGTAGCTTGGCATCCAGCAATGGAGCCCCAGCAGAAGTTAAGCTTGAGACTATCAGGAGCCTTATTGATTTCGATGATACCCCCGAACCACCTATTGCTCCAGCAATTCCTCAAGCCACACAAACTACCGTGGCTCAACTTGTGAATCCAACAAATTCTGGTGATAACAATTGGGCCTCCTTTGATGTTGCACCTGTGGTAAAAGTATCTCAGATTCATTCAAACGTAAATCCACTTGATTCTATGCTGTCCCAGTTGTCAGTTCCATCATCTTTACATGCTCAAGTTTCTGGAGCCCAAGGGCCTTTGGTGGGATCAGCTATTAATGCTACTGCTGGAGGAGCTCCAACTGTGAGCAGCTTCGCAACTTTCCCAGCCAGTGTTGCTTCATTAACATCTTCTGGATTGACAACAGCATCAGCTTTCAATAATGCAGGCTCGTGGCCTAGTTTTCAGTATCAGCAACAGCAACCGTTGTTCACATCTACTGTTGGTCAGCCTACTATTCAACAATCTACACCACCAGTTGGTGGAGCTTTGAATAATCAGCCCTGGATTACATCTTCTCTACCCACGATACAGGGGCATCCAGTAACACATGTGTCAAAGGTTGTCGATGAAGAAAAGTCTAGTGTTGCTTCACAAAATTCTACTGTAAACGTAAAACCAAGTGGAAGAAATGAACTTCCTGAGGATCTATTCACTGTAAACTATTCATCTTTTCCTGCTCGAGTCCCAGGGTGGCAAATGGGTGCACCGCCTGGCATGGGTGTCTCAGTTCATTATAATAATGTGATGTCCGTGCCGAGTTTCCCACAACCATCACAATCTACAAATCCATTTGATGTGATCAATGAACCAACTTCAGTTCAAGCCCCAACTTTTCCTTCTATGTCATCTTTGCAAGGTGCCCTGCCTAGTGTAACACCTTTAGCTACGGTGCACCCTTCAAACATGGGTAATCAATCTTTTGCATGGAATCCACCCTCCTCGTTATCGTATGCACCAATGTTGCCTCCACAAGCACAAACTCTAGCCTCAACAATGGGACCAAGGGCATACGTGGAGCAACAAATGCCAACTAACATGCCAATGCCAAGGCATCAAGGAGTTGGGACTTTTGGAACCGAGGGAACTGCTTTTGGCTTCTCTAATATAGATCAGCAGATGAATGGTAGGTTGCCAGCCTCTGCTACCTTAAACCCCTTCCCTGCAGGAGGTAATCCGTTCGGATGA 2091 0.4467 MSRIKEDEKNERIIRGLLKLTPNRRCINCNSMGPQYVCTNFWTFVCTNCSGIHREFTHRVKSISMAKFTAQEVSALQEGGNQRAKETFFKEWDPQSNSLPDSSNVDRLRDFIKHVYVDRRFTGERSYDKPPRVKGDKDDSYENRRLETYQGGPKSPPYEDTYERRYSDRSSPGGRSPGYDQERHYADNKRSPGRPPIINDWRREDRFGGGQKFEDRRISDGGNKMESQSPERAKDLDSSSPPPVVRPVREILGENVVPLRISEPPKANSGQAANGSALTQRTASSSSLASSNGAPAEVKLETIRSLIDFDDTPEPPIAPAIPQATQTTVAQLVNPTNSGDNNWASFDVAPVVKVSQIHSNVNPLDSMLSQLSVPSSLHAQVSGAQGPLVGSAINATAGGAPTVSSFATFPASVASLTSSGLTTASAFNNAGSWPSFQYQQQQPLFTSTVGQPTIQQSTPPVGGALNNQPWITSSLPTIQGHPVTHVSKVVDEEKSSVASQNSTVNVKPSGRNELPEDLFTVNYSSFPARVPGWQMGAPPGMGVSVHYNNVMSVPSFPQPSQSTNPFDVINEPTSVQAPTFPSMSSLQGALPSVTPLATVHPSNMGNQSFAWNPPSSLSYAPMLPPQAQTLASTMGPRAYVEQQMPTNMPMPRHQGVGTFGTEGTAFGFSNIDQQMNGRLPASATLNPFPAGGNPFG 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05714 696 MobiDBLite consensus disorder prediction 123 246 - -
Trre8g05714 696 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 129 IPR001164 GO:0005096
Trre8g05714 696 MobiDBLite consensus disorder prediction 123 145 - -
Trre8g05714 696 PRINTS HIV Rev interacting protein signature 60 81 IPR001164 GO:0005096
Trre8g05714 696 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Trre8g05714 696 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Trre8g05714 696 SMART arf_gap_3 11 129 IPR001164 GO:0005096
Trre8g05714 696 Pfam Putative GTPase activating protein for Arf 12 123 IPR001164 GO:0005096
Trre8g05714 696 CDD ArfGap_AGFG 11 121 - -
Trre8g05714 696 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 134 - -
Trre8g05714 696 MobiDBLite consensus disorder prediction 261 295 - -
Trre8g05714 696 MobiDBLite consensus disorder prediction 180 233 - -
Trre8g05714 696 SUPERFAMILY ArfGap/RecO-like zinc finger 10 122 IPR037278 -
Trre8g05714 696 Gene3D Arf GTPase activating protein 2 130 IPR038508 -
Trre8g05714 696 PANTHER ARFGAP/RECO-RELATED 1 696 IPR044820 GO:0005096
Trre8g05714 696 MobiDBLite consensus disorder prediction 267 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05714 Trre-Chr8 58251877 58258402 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05714 11 121 C2H2 Transcription Factor Family AT4G21160 29.310 2.62e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05714 - - gmx:100781002 993.03