Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05713 ATGAGTCGAATAAAGGAAGATGAGAAAAATGAACGAATTATTCGAGGTCTTCTCAAACTGACACCGAATCGAAGATGCATTAACTGCAACAGTATGGGACCACAATATGTATGCACAAATTTTTGGACGTTTGTTTGCACAAACTGCAGTGGAATACACCGGGAATTTACTCATCGAGTAAAATCAATATCCATGGCTAAATTTACTGCACAAGAAGTTAGTGCACTTCAAGAAGGAGGAAATCAGCGTGCAAAAGAAACATTTTTTAAAGAATGGGATCCACAAAGTAATTCTTTACCTGATAGCAGTAATGTTGACAGGCTACGGGACTTTATCAAGCATGTTTATGTGGATAGGAGATTCACTGGCGAGAGGTCCTATGACAAACCTCCAAGAGTAAAGGGCGACAAGGATGATTCCTATGAAAACAGGAGGCTGGAAACATATCAGGGAGGACCTAAAAGCCCTCCGTATGAGGACACATATGAACGCCGTTACAGTGACAGATCTAGTCCAGGTGGAAGAAGTCCTGGATATGATCAAGAAAGGCATTATGCCGATAATAAGAGAAGCCCAGGTCGCCCTCCAATAATCAATGATTGGCGTCGTGAAGATAGATTTGGGGGTGGACAGAAATTTGAAGACCGTAGAATATCTGATGGAGGTAATAAGATGGAAAGCCAATCTCCCGAGCGAGCCAAAGACCTGGATTCTTCAAGTCCACCACCTGTTGTCCGACCTGTTAGAGAAATTCTGGGAGAAAATGTAGTACCTCTACGAATTAGTGAACCTCCCAAAGCAAACAGTGGACAGGCTGCTAATGGCTCAGCACTCACACAGAGAACGGCATCTTCCAGTAGCTTGGCATCCAGCAATGGAGCCCCAGCAGAAGTTAAGCTTGAGACTATCAGGAGCCTTATTGATTTCGATGATACCCCCGAACCACCTATTGCTCCAGCAATTCCTCAAGCCACACAAACTACCGTGGCTCAACTTGTGAATCCAACAAATTCTGGTGATAACAATTGGGCCTCCTTTGATGTTGCACCTGTGGTAAAAGTATCTCAGATTCATTCAAACGTAAATCCACTTGATTCTATGCTGTCCCAGTTGTCAGTTCCATCATCTTTACATGCTCAAGTTTCTGGAGCCCAAGGGCCTTTGGTGGGATCAGCTATTAATGCTACTGCTGGAGGAGCTCCAACTGTGAGCAGCTTCGCAACTTTCCCAGCCAGTGTTGCTTCATTAACATCTTCTGGATTGACAACAGCATCAGCTTTCAATAATGCAGGCTCGTGGCCTAGTTTTCAGTATCAGCAACAGCAACCGTTGTTCACATCTACTGTTGGTCAGCCTACTATTCAACAATCTACACCACCAGTTGGTGGAGCTTTGAATAATCAGGGGCATCCAGTAACACATGTGTCAAAGGTTGTCGATGAAGAAAAGTCTAGTGTTGCTTCACAAAATTCTACTGTAAACGTAAAACCAAGTGGAAGAAATGAACTTCCTGAGGATCTATTCACTGTAAACTATTCATCTTTTCCTGCTCGAGTCCCAGGGTGGCAAATGGGTGCACCGCCTGGCATGGGTGTCTCAGTTCATTATAATAATGTGATGTCCGTGCCGAGTTTCCCACAACCATCACAATCTACAAATCCATTTGATGTGATCAATGAACCAACTTCAGTTCAAGCCCCAACTTTTCCTTCTATGTCATCTTTGCAAGGTGCCCTGCCTAGTGTAACACCTTTAGCTACGGTGCACCCTTCAAACATGGGTAATCAATCTTTTGCATGGAATCCACCCTCCTCGTTATCGTATGCACCAATGTTGCCTCCACAAGCACAAACTCTAGCCTCAACAATGGGACCAAGGGCATACGTGGAGCAACAAATGCCAACTAACATGCCAATGCCAAGGCATCAAGGAGTTGGGACTTTTGGAACCGAGGGAACTGCTTTTGGCTTCTCTAATATAGATCAGCAGATGAATGGTAGGTTGCCAGCCTCTGCTACCTTAAACCCCTTCCCTGCAGGAGGTAATCCGTTCGGATGA 2058 0.4461 MSRIKEDEKNERIIRGLLKLTPNRRCINCNSMGPQYVCTNFWTFVCTNCSGIHREFTHRVKSISMAKFTAQEVSALQEGGNQRAKETFFKEWDPQSNSLPDSSNVDRLRDFIKHVYVDRRFTGERSYDKPPRVKGDKDDSYENRRLETYQGGPKSPPYEDTYERRYSDRSSPGGRSPGYDQERHYADNKRSPGRPPIINDWRREDRFGGGQKFEDRRISDGGNKMESQSPERAKDLDSSSPPPVVRPVREILGENVVPLRISEPPKANSGQAANGSALTQRTASSSSLASSNGAPAEVKLETIRSLIDFDDTPEPPIAPAIPQATQTTVAQLVNPTNSGDNNWASFDVAPVVKVSQIHSNVNPLDSMLSQLSVPSSLHAQVSGAQGPLVGSAINATAGGAPTVSSFATFPASVASLTSSGLTTASAFNNAGSWPSFQYQQQQPLFTSTVGQPTIQQSTPPVGGALNNQGHPVTHVSKVVDEEKSSVASQNSTVNVKPSGRNELPEDLFTVNYSSFPARVPGWQMGAPPGMGVSVHYNNVMSVPSFPQPSQSTNPFDVINEPTSVQAPTFPSMSSLQGALPSVTPLATVHPSNMGNQSFAWNPPSSLSYAPMLPPQAQTLASTMGPRAYVEQQMPTNMPMPRHQGVGTFGTEGTAFGFSNIDQQMNGRLPASATLNPFPAGGNPFG 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05713 685 MobiDBLite consensus disorder prediction 123 246 - -
Trre8g05713 685 Pfam Putative GTPase activating protein for Arf 12 123 IPR001164 GO:0005096
Trre8g05713 685 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 129 IPR001164 GO:0005096
Trre8g05713 685 MobiDBLite consensus disorder prediction 123 145 - -
Trre8g05713 685 SMART arf_gap_3 11 129 IPR001164 GO:0005096
Trre8g05713 685 Gene3D Arf GTPase activating protein 2 130 IPR038508 -
Trre8g05713 685 MobiDBLite consensus disorder prediction 450 470 - -
Trre8g05713 685 CDD ArfGap_AGFG 11 121 - -
Trre8g05713 685 SUPERFAMILY ArfGap/RecO-like zinc finger 10 122 IPR037278 -
Trre8g05713 685 PANTHER ARFGAP/RECO-RELATED 1 685 IPR044820 GO:0005096
Trre8g05713 685 MobiDBLite consensus disorder prediction 261 295 - -
Trre8g05713 685 MobiDBLite consensus disorder prediction 180 233 - -
Trre8g05713 685 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 134 - -
Trre8g05713 685 PRINTS HIV Rev interacting protein signature 60 81 IPR001164 GO:0005096
Trre8g05713 685 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Trre8g05713 685 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Trre8g05713 685 MobiDBLite consensus disorder prediction 267 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05713 Trre-Chr8 58251877 58258402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05713 11 121 C2H2 Transcription Factor Family AT4G21160 29.310 2.73e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05713 - - gmx:100815114 978.008