Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05691 ATGTCATCATCATTCTCTATCTTCCCATCACTCCCATCACTTCAAAACCCTAACTTGGACCATACCCATTTCTTCAATCCCATCAAATTCCCCAAATTCAATCTCAATTCAACAACACTCTCTTCTTCACCACCACGCTCTCTCCCCAACTTCCCCCAACTCTACAAAACCTCTTCAACTCTTCGCCGTAGAATCCCCTGCAATAAAGCTTTGAAGGATTCCGGTGGTGGCGGCGGCGGTGGAGATGATGGTGGTGGTGACCGTGAAGTGGAGAAGAAAAATGAGTCGTCGGGTCCTTTTTCAAATTGGTTGAATTTCACTTCTGATGACGCCAAAACAGTGTTTGCTACTCTTGCAATATCGCTTGCATTTCGTACATTCATTGCTGAACCTAGGTTCATTCCTTCCTTGTCAATGTATCCTACGTATGATGTTGGTGATCGAATTGTTGCCGAAAAGGTTTCGTACTATTTTAGAAAGCCGTGTGCAAATGATATTGTGATATTTAAAAGCCCTCCGGTCCTTCAAGAAGTTGGATACACTGATAATGATGTTTTCATAAAACGTGTTGTTGCAAAGGAAGGAGATGTCGTAGAGGTTCGTAATGGGCATCTTGTAGTTAATGGGGTTGAGAGGGACGAGAAGTTTATCAATGAACCACCGAAGTATGAGATGAAACCCACACGTGTGCCAGAGAACTTCGTTTTTGTGATGGGAGACAACCGCAATAACAGCTACGACTCACATGTGTGGGGTCCCTTACCAGCCAAGAATATCATAGGTAGATCAGTATTCCGCTATTGGCCACCAAATAGAATTGGCAACACAGTTGCTGAGGGAGGGTGCCCTGTTGAAACCAAGCCGGAGACGACTACTACTACTACTACTAGTACTACTCTAGCATCTCAATGA 912 0.4419 MSSSFSIFPSLPSLQNPNLDHTHFFNPIKFPKFNLNSTTLSSSPPRSLPNFPQLYKTSSTLRRRIPCNKALKDSGGGGGGGDDGGGDREVEKKNESSGPFSNWLNFTSDDAKTVFATLAISLAFRTFIAEPRFIPSLSMYPTYDVGDRIVAEKVSYYFRKPCANDIVIFKSPPVLQEVGYTDNDVFIKRVVAKEGDVVEVRNGHLVVNGVERDEKFINEPPKYEMKPTRVPENFVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVFRYWPPNRIGNTVAEGGCPVETKPETTTTTTTSTTLASQ 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05691 303 Coils Coil 301 303 - -
Trre8g05691 303 MobiDBLite consensus disorder prediction 282 303 - -
Trre8g05691 303 NCBIfam signal peptidase I 112 270 IPR000223 GO:0006508|GO:0008236|GO:0016020
Trre8g05691 303 PANTHER SIGNAL PEPTIDASE I 99 275 IPR000223 GO:0006508|GO:0008236|GO:0016020
Trre8g05691 303 CDD S26_SPase_I 130 262 IPR019533 GO:0004252|GO:0006465
Trre8g05691 303 MobiDBLite consensus disorder prediction 66 97 - -
Trre8g05691 303 SUPERFAMILY LexA/Signal peptidase 125 276 IPR036286 -
Trre8g05691 303 Gene3D Umud Fragment, subunit A 124 279 - -
Trre8g05691 303 MobiDBLite consensus disorder prediction 286 303 - -
Trre8g05691 303 PRINTS Bacterial leader peptidase 1 (S26A) family signature 127 143 IPR000223 GO:0006508|GO:0008236|GO:0016020
Trre8g05691 303 PRINTS Bacterial leader peptidase 1 (S26A) family signature 230 249 IPR000223 GO:0006508|GO:0008236|GO:0016020
Trre8g05691 303 PRINTS Bacterial leader peptidase 1 (S26A) family signature 186 198 IPR000223 GO:0006508|GO:0008236|GO:0016020
Trre8g05691 303 FunFam Peptidase/ serine-type peptidase 136 267 - -
Trre8g05691 303 Pfam Signal peptidase, peptidase S26 111 268 IPR019533 GO:0004252|GO:0006465
Trre8g05691 303 ProSitePatterns Signal peptidases I signature 3. 235 248 IPR019758 GO:0004252|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05691 Trre-Chr8 58093125 58095611 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05691 139 269 MADS-box Gene Family AT1G29960 33.333 1.06e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05691 K03100 - gmx:100815810 380.178