Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05681 ATGGCGACGGAGCGTCAATCCAAGAGTTGGAGCATCCATACCCGATCGGAGATCATCGCCAAGTACCAAATCCTGGAACGAATCGGTTCCGGAGCTTATGCCGACGTCTACCGTGGCCGTCGTCACTCCGACGACCTAACAGTTGCTCTCAAGGAAATCCACGATTACCAATCCGCTTTCCGAGAAATCGAAGCATTGCAAATGCTTCAAGGTTCTCCAAACGTCGTCGTCATGCACGAGTACTTCTGGCGTGAAGACGAAGATGCTGTTATCGTTCTTGAATACCTCACCACCGACTTGTCCACCGTCATTTCCAATGCCGCCAAGGAAGGTATTCCACTTCCCGTCGGTGAGATGAAGCGTTGGATGATTCAGATTCTTTCTGGCCTTGATTCCTGTCACCGGAATATGATTGTTCATCGTGATTTGAAGCCTTCTAATCTCTTAATTTCTGATTCTGGTATTCTCAAATTGGCTGATTTTGGACAGGCAAGGATAATCACAGAGCCTGGATTTGATGCTTTTGAGGAGAATCCACCACCGTGTGAGCATGATAGTTCTAATCACGAAAGCTCACTTCCTCACACTGACAACTTAGGCCAATTCAGATGTGAAAATCAAGAGCAGGGAAGCAGTCATGAAGAGTATATTGGTGTTTCAGATGAGCTGAAAACAAAGAGATCTGCGGATGATGTTGATAAGGATACCAACATTCCCGATGGAAATACTTCTTGTCTTGCAACGTGCACAACAAGTGATATGGATAATGATCCTATGAGAACTTCTTTTAGTTATGAAGCAATGGAGGGGGAAGATAGAGAAAGTGGTGGTTTCACGTCATGTGTTGGAACTCGCTGGTTCCGTGCTCCTGAGTTGCTTTACGGATCCGTAAACTATGGTTTAGAAATTGATCTCTGGTCACTTGGATGTATTTTTGCTGAGCTCTTGACTCTTAAGCCCTTGTTTCCTGGAACGGCTGATATTGACCAGCTCAGTAGAATTATTAATGTTTTGGGCAACCTTGATGAGAGAGCTTGGTCTGGTTGTTCAAAACTTCCTGATTACGGAATAATCTCATTTAGCAAGGTAGAAAACCCTGCTGGTGTTGAAGCCTGTCTGCCCAACCGCTCACCCGATGAAGTATCTCTGGTCAAAAAACTGATTTGTTATGATCCGGCTAGGAGGGCTAAAGCAATGGAGCTACTCCATGACAAGTACTTTAATGAAGAACCTCTTCCTGTTCCTGTTTCTGAGTTGCAAGTTCCTTTGACCAGAAATACAGAAGATGAGGATTCTGTTGGTGGGTGGCAGGATTACAATGACATGGGTTCTGATTCTGATTTCGATGACTTTGGCCCTGTGAATTTCACCAGAACTGGTACCGGTTTCTCCATACAGTTTCCTTGA 1407 0.4492 MATERQSKSWSIHTRSEIIAKYQILERIGSGAYADVYRGRRHSDDLTVALKEIHDYQSAFREIEALQMLQGSPNVVVMHEYFWREDEDAVIVLEYLTTDLSTVISNAAKEGIPLPVGEMKRWMIQILSGLDSCHRNMIVHRDLKPSNLLISDSGILKLADFGQARIITEPGFDAFEENPPPCEHDSSNHESSLPHTDNLGQFRCENQEQGSSHEEYIGVSDELKTKRSADDVDKDTNIPDGNTSCLATCTTSDMDNDPMRTSFSYEAMEGEDRESGGFTSCVGTRWFRAPELLYGSVNYGLEIDLWSLGCIFAELLTLKPLFPGTADIDQLSRIINVLGNLDERAWSGCSKLPDYGIISFSKVENPAGVEACLPNRSPDEVSLVKKLICYDPARRAKAMELLHDKYFNEEPLPVPVSELQVPLTRNTEDEDSVGGWQDYNDMGSDSDFDDFGPVNFTRTGTGFSIQFP 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05681 468 SUPERFAMILY Protein kinase-like (PK-like) 10 428 IPR011009 -
Trre8g05681 468 MobiDBLite consensus disorder prediction 215 237 - -
Trre8g05681 468 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Trre8g05681 468 Gene3D Phosphorylase Kinase; domain 1 13 107 - -
Trre8g05681 468 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524
Trre8g05681 468 MobiDBLite consensus disorder prediction 174 237 - -
Trre8g05681 468 SMART serkin_6 22 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g05681 468 ProSiteProfiles Protein kinase domain profile. 22 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g05681 468 PANTHER CELL DIVISION PROTEIN KINASE 21 413 - -
Trre8g05681 468 FunFam Cyclin-dependent kinase F-1 13 107 - -
Trre8g05681 468 Gene3D Transferase(Phosphotransferase) domain 1 108 410 - -
Trre8g05681 468 Pfam Protein kinase domain 275 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g05681 468 Pfam Protein kinase domain 22 170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g05681 468 MobiDBLite consensus disorder prediction 192 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05681 Trre-Chr8 58037158 58038846 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05681 4 468 Core Cell Cycle Gene Families AT4G28980 61.635 0.0 591
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Trre8g05681 Pkinase 1.1e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05681 - - ahf:112726382 714.916