Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05679 ATGGACACCGTAACCGTCACAACACGAGCTCAGATCCTCCGTTACATAACCGCATTCATCACCGGCGTAATTAATCAATCAGAACTCCGTCGCAGCCTCATTGAAACGCTACACCGTGAAACTCAAATCTCCAATCAAGTAACCCTAAAACAACTGAATCTCGCTGTAGATGCTCTCGAAAGCGCCATTTCTCTCTCCAGTTCCGCCACTCGTTCTTCCTCTCTCTCACTGGCCGAGAAGCTTCTCCTTCCTCTTCCAGAGCATCCTCTCTCTTCCTTCCTACTCTCCCTCGTTCAAACCCTCCGTAACTGTCCAGACGAATCCGCAATCACTCTCCTCCGAATCTTCAATTCCAATCCTTCACTCGCCCGATCTGAAATAGCACCTTATCTCTACGAGCATCTCTTTTATCTTCACCTTTTCCCTGTTTTCCGGTGGTTTGATGAACAGAGAACACGGATTTTGCCGTCAACTTCTGAAACACCAAGCCGTGACACCGGTGACTACTCGGTTTCCGATGAGTTAGTGACTATGCCTTACGTGAAGTTGTTGTCGAGTGTGAGCGGTGATCAAGCGTCAAAGCTGAGGGAGTTGGAGAGAGAGTATGAAGAGGTTTTGGATGAGAATTGTAGGGTTCTTGCTGTGTATTTTAGAGAGGTTTTGGTAAATAAAGACGAAAATTCAACAATTAGTCCACCATTGTTGATATTGAATAGTGCCGTAGAAGGTGGCCGCGGCAACAATGGTGGAGAGGACATAAAGGAGGAAATGCAAATGCCTGTGATGGAGAACGGACGGTATAATCCAATGTGGTCCGAAAGGGATACGTCTATTGAATATTTGAGCAGCAGTTCTAGCAGTAGATCCTCCCAGGCACCATTATATCCTCAAAGAGTCTCTCCTGTAGTCCTCAATCCCCGAAAATCTTCAAATTACTGGACAACACCGGTCTATTTAAACTTAGCCGCCGAAACTCAATTTTCTTTAGATAAGAATTCCCTTTGTTCTTCTTCGGATTCTGAAGTTGAAAACGAGGAAAAAGACAAAAATATAGCATTGTTGGAGTCTCAACAAAGCCAAACCCAGGAACAAATGCAAGCCATCTTCAAAGAATCCAGGGGCTCCCCAGATTATCCTATGGCAGACTACGAAATCACACCCCCGCATGGAAGTGGGAAGCAAACACCTCCTAAAGACTTTGTCTGTCCAATAACCAGTAACATATTTGATGATCCAGTGACTCTTGAGACTGGTCAGACATATGAACGTAAAGCTATCGAGGAATGGTTCAATAGAGGGAACACAGCTTGTCCTATCACTCGTCAGAATCTGCAAAACACCAAGCTACCTAAGACAAATTATGTGCTCAAAAGACTAGTTGCTAGCTGGAAAGAACACAACCCCAGTTCAGTCCCGCCAACATGTGAGAGTCCATACAAAGATAACGAGGAAGATGTAAAGACAACAATGCCTTCGGCTTCTCCTAATAGTGTCATAATGCAAGCCACCGTTGATGGGATGGTTAGTGAGTTACGCTGTGCAATCAATAACCTGTACATGTCAGAGATTCTCCAGGAATCTGAAATGGCGGTTCTTCAAATTGAGAAATTGTGGAGAGGAGGGAATCTGGGAGTGGATATCCATAGCATGCTATCAAAACCTCCAATAATTAATGGGTTTGTGGAGATACTTTTCAATTCTGTTGAAGCCCATGTGCTACAGGCGGCAGTTTTCCTTCTGTCCGAGATGGGCTCTAGAGACAATGCTGTTATTCAGACTCTCACACGTGTAGACACTGACGTTGAATGTATAATGGCTCTTTTCAAGAAAGGGTTGACAGAGGCTGTTGTGCTATTGTATCTCCTAAACCCTTCCCCTGTGACTCTTACTGAGATGGCCATAGTGGAGTCCCTCATAGAGGTTTTTAGTCAGAAAGAGGAAGACTTGGTTAAGATGTGTTTAAATCCCACAACAGCTGCGATTCTTCTACTGGCACAGATTATTGGAAGCAGTGACGAGATAATTGCATCTTCAGTTGTCAAGGCTCTGTTCTCTGAAAAAGCCATCGGAGCTATTGCTGGCAGTTTGAGAGCTGAATGGGCAGAGGAAAGGATCGCTGCAGTGGAGATCTTATTGAGATGCATGCAAGAGGATGGGACTTGCAGGAACACCATTGCCGATAAAGCAGAGCTGTCTCCTATTCTTGAAACCTTCATCTGTGCAACTGATGCAGAGCGTTTCAAGATCGTTGAATTTTTTTCTGAATTGATCAAACTAAATAGGAGAACATTCAATGATCGAATCCTCCACATTATAAAGGAAGAAGGACCTTTTAGTACAATGCATACTCTTCTTATTCATTTGCAGACAGCCCTTCAAGATCAATGTCCAGTCATGGCCGGTCTTTTACTCCAACTTGATCTTCTGGTCGAACCGAGAAATATGAGCATATACCGTGAAGAGGCGATAGATACTCTTATTTCATGCCTGAAGAACTCAGATTTCCCTACTACCCAGTTAGCAGCTGCTAATACAATCATGTCACTGCAAGGGAGGTTCAGCTTCTCTGGAAAGCCTCTTATCAGAGAAGTCCTTCTTAAACGTGCAGGTATTGACAAAGGTCCCAGAAGTGATGTACAGGTGGATCATATGAGCAACTTCTTCTCAGAAATCGAAATAACTCCAGAAGAAGAGAAGGCGGCAGATGATTGGGAAAGAAAAATTGCATCTGTCCTAGTTAGCCACGAGTTTGGTATAATTTTTGAAGCTTTGGCAGATGGCATGAAGAGCAGAATTCCAGAACTACGTTCAGCGTGCTTTATATCAGCTACGTGGCTCATATACATGCTGACCATTCTACCAGATACAGGGATACAAGGAGCAGCCCGTGTCTGTTTGCTAAAGCAGTTTGTAAATAAATTAAATTCTGCTAAGGGCGTAGAACACAAAATCCTTTCTATGCTTGCTCTCAATAGCTTTCTTCATTTCTCTGACGGTGTACGTGATCTAACTGCTTCCTATGCTAAGGATATCTTAAAAGGTTTGAGAGAGCTAAAGAGATTCTCTCCCTTGGCATCTGAAATGCTGAAAGTTCTGGTTGATGACAATGACTCTGAAACAGAAATTTGGAGACATAAAGAGCTAATTCAAGAAGATTGCAGAGAGAATGGAGAAGTGTTGTCTGTCATTTGCTTCAAGGATAAAATTATTTCAGGCCATACAGATGGAAGCATCAAGGTCTGGACATTAAAGGATAACTTATTACTTCTGATGCAAGAGATCCAAGAACATGCTAAGGCTGTGACAAACTTGACGATTTCAGAATCTAGTGACAGACTTTACAGTGGTTCACTTGACCGAACTGCAAAGATCTGGTCTATTGGAAAGGAAGAAATATATTGTGAGCAGGTGCATGATATGAAGGACCAGATTCATAATTTAGTTGTAATCAATAGCACAACTTGTTTCATTCCGCAGGGGACTGGTGTCAAGGTTCAGTCATTGAATGGAGAATCCAAGTTGTTAAATTCTAATAAATATGTGAAGTGTTTGGCTCATGCACATGGAAGATTATACTGTGGATGCCATGACAGTAGTGTTCAGGAGATACATTTGTCCACTGGAACTATCAGTAATATTCAAAGTGGTTATAAAAGATTACTTGGGAAATCATATCCAATTCACGCAATGCAAATTCATGGTGAACTTATATATGCAGCTGGCTCTTCCTTGGACGGAACTTCAATAAAGATATGGAACAATTCCAATTACAGTATGATTGGATCGCTGCAAACTGGATCAGAAGTGCGGGCTATGGCAGTGAGTTCAGAATTAATTTATCTTGGGTGCAAGGGAGGTACTGTAGAAATTTGGGATAAGAAGAAACACATTAGAGTTGGCACATTACAGTTAGGTACAAATTGTAAGGTTAATTCCATGGCTCTAGGCAGCAATGAAGAAATTTTGGTGATTGGAACTTCAGATGGCCAAATTCAGGCATGGGAAATGAATTAA 4014 0.4248 MDTVTVTTRAQILRYITAFITGVINQSELRRSLIETLHRETQISNQVTLKQLNLAVDALESAISLSSSATRSSSLSLAEKLLLPLPEHPLSSFLLSLVQTLRNCPDESAITLLRIFNSNPSLARSEIAPYLYEHLFYLHLFPVFRWFDEQRTRILPSTSETPSRDTGDYSVSDELVTMPYVKLLSSVSGDQASKLRELEREYEEVLDENCRVLAVYFREVLVNKDENSTISPPLLILNSAVEGGRGNNGGEDIKEEMQMPVMENGRYNPMWSERDTSIEYLSSSSSSRSSQAPLYPQRVSPVVLNPRKSSNYWTTPVYLNLAAETQFSLDKNSLCSSSDSEVENEEKDKNIALLESQQSQTQEQMQAIFKESRGSPDYPMADYEITPPHGSGKQTPPKDFVCPITSNIFDDPVTLETGQTYERKAIEEWFNRGNTACPITRQNLQNTKLPKTNYVLKRLVASWKEHNPSSVPPTCESPYKDNEEDVKTTMPSASPNSVIMQATVDGMVSELRCAINNLYMSEILQESEMAVLQIEKLWRGGNLGVDIHSMLSKPPIINGFVEILFNSVEAHVLQAAVFLLSEMGSRDNAVIQTLTRVDTDVECIMALFKKGLTEAVVLLYLLNPSPVTLTEMAIVESLIEVFSQKEEDLVKMCLNPTTAAILLLAQIIGSSDEIIASSVVKALFSEKAIGAIAGSLRAEWAEERIAAVEILLRCMQEDGTCRNTIADKAELSPILETFICATDAERFKIVEFFSELIKLNRRTFNDRILHIIKEEGPFSTMHTLLIHLQTALQDQCPVMAGLLLQLDLLVEPRNMSIYREEAIDTLISCLKNSDFPTTQLAAANTIMSLQGRFSFSGKPLIREVLLKRAGIDKGPRSDVQVDHMSNFFSEIEITPEEEKAADDWERKIASVLVSHEFGIIFEALADGMKSRIPELRSACFISATWLIYMLTILPDTGIQGAARVCLLKQFVNKLNSAKGVEHKILSMLALNSFLHFSDGVRDLTASYAKDILKGLRELKRFSPLASEMLKVLVDDNDSETEIWRHKELIQEDCRENGEVLSVICFKDKIISGHTDGSIKVWTLKDNLLLLMQEIQEHAKAVTNLTISESSDRLYSGSLDRTAKIWSIGKEEIYCEQVHDMKDQIHNLVVINSTTCFIPQGTGVKVQSLNGESKLLNSNKYVKCLAHAHGRLYCGCHDSSVQEIHLSTGTISNIQSGYKRLLGKSYPIHAMQIHGELIYAAGSSLDGTSIKIWNNSNYSMIGSLQTGSEVRAMAVSSELIYLGCKGGTVEIWDKKKHIRVGTLQLGTNCKVNSMALGSNEEILVIGTSDGQIQAWEMN 1337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05679 1337 SUPERFAMILY RING/U-box 385 470 - -
Trre8g05679 1337 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1094 1127 - -
Trre8g05679 1337 SMART WD40_4 1045 1082 IPR001680 GO:0005515
Trre8g05679 1337 SMART WD40_4 1207 1253 IPR001680 GO:0005515
Trre8g05679 1337 SMART WD40_4 1295 1335 IPR001680 GO:0005515
Trre8g05679 1337 SMART WD40_4 1087 1126 IPR001680 GO:0005515
Trre8g05679 1337 SMART WD40_4 1161 1204 IPR001680 GO:0005515
Trre8g05679 1337 SMART WD40_4 1256 1292 IPR001680 GO:0005515
Trre8g05679 1337 MobiDBLite consensus disorder prediction 467 493 - -
Trre8g05679 1337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 388 472 IPR013083 -
Trre8g05679 1337 SMART Ubox_2 399 463 IPR003613 GO:0004842|GO:0016567
Trre8g05679 1337 ProSiteProfiles Trp-Asp (WD) repeats profile. 1094 1127 IPR001680 GO:0005515
Trre8g05679 1337 ProSiteProfiles Trp-Asp (WD) repeats profile. 1303 1337 IPR001680 GO:0005515
Trre8g05679 1337 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 5 1336 - -
Trre8g05679 1337 Pfam U-box domain 397 467 IPR003613 GO:0004842|GO:0016567
Trre8g05679 1337 Pfam WD domain, G-beta repeat 1093 1126 IPR001680 GO:0005515
Trre8g05679 1337 Gene3D - 1148 1337 IPR015943 GO:0005515
Trre8g05679 1337 Coils Coil 188 208 - -
Trre8g05679 1337 SUPERFAMILY ARM repeat 521 1039 IPR016024 -
Trre8g05679 1337 CDD RING-Ubox_PUB 397 449 IPR045210 -
Trre8g05679 1337 ProSiteProfiles U-box domain profile. 395 470 IPR003613 GO:0004842|GO:0016567
Trre8g05679 1337 Gene3D - 1019 1147 IPR015943 GO:0005515
Trre8g05679 1337 SUPERFAMILY WD40 repeat-like 1066 1336 IPR036322 GO:0005515
Trre8g05679 1337 Coils Coil 344 364 - -
Trre8g05679 1337 ProSitePatterns Trp-Asp (WD) repeats signature. 1322 1336 IPR019775 -
Trre8g05679 1337 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1303 1337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05679 Trre-Chr8 58025288 58032029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05679 397 484 U-box Gene Family AT5G42340 44.318 1.55e-17 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05679 - - gmx:100808867 1942.55