Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05678 ATGAATAGAGGTGTTAATCTACAAAGCTCACCAGTGCAACAAATTATGATGGCTGGAAACCCTAACAACTGGTGGAACACCATGCGCCCTCCTACACCTGATCATCATCATCATCATCACCACCAACCTTTCTTCTCTACCACCACCACTACTACTAGTCCTTCTCCTTCTAATAATTACTTTGTAACTCCATATCCTACTTCTCTTCCTCTTCCTTCTTGGCATGAAAATCAAGATCAACTTCCTGAGTCATGGAGTCACTTACTCATGAGTGGTGGTGTGGTTTATGAAGAAGATAAGGAACAAATTATGCTAAGTCAGCCTCATTCAAATGCTTCTTCTCTTGTTGATCATGTTAAACAAGAAACCTCAGTAAACAACTATGTTTATGGAAATGAAGAATTTCATGGAACAACTAATTCTACTTGGTCTCAAATAGTGTCGGTGCCTTCTTCTTCTTCTAATTCCTCCAAATCTAGCATGTTGGATTTTTCTAACAATAAATTTGATACAAGATCTCCACCATCAGATCCATCCTCTGATCAGTGCAATAGTGGTGCAACTGGTGGGGCATTGAAGAAAGCTAGGGTTCAACCATCTACAAATCAGTCTACCTTCAAGGTTAGGAAGGAGAAGTTAGGTGACAGAATTACTGCCCTTCATCAACTCGTTTCCCCATTTGGAAAGACTGACACAGCATCTGTCTTATTAGAATCAATTGGTTATATCAGATTCCTTCAGAGTCAAATTGAGGCACTTAGCTTACCATACTTGGGAAATGGATCATTAGGAGGAGTAGGGAACATCAAGAACCAACAACAACAATATGTTCAAGGAGAGAAGAATTGTTTTTTCCCTGAACACCCTGGTCAGCTGCTGAATGAAAACTGTTTGAAGAGAAAGGCACTAGAGCAGGATTGTGAAGAAGAAGAAGAAGAAAAGAAGGACCTGAGGAGTAGAGGATTATGTTTGGTTCCAGTTTCATGCACACTGCAAGTTGGAAGTGAAAATGGAGCTGATTATTGGAATCCTGCTTTTGGTGGTGGATACCAGTAG 1056 0.4025 MNRGVNLQSSPVQQIMMAGNPNNWWNTMRPPTPDHHHHHHHQPFFSTTTTTTSPSPSNNYFVTPYPTSLPLPSWHENQDQLPESWSHLLMSGGVVYEEDKEQIMLSQPHSNASSLVDHVKQETSVNNYVYGNEEFHGTTNSTWSQIVSVPSSSSNSSKSSMLDFSNNKFDTRSPPSDPSSDQCNSGATGGALKKARVQPSTNQSTFKVRKEKLGDRITALHQLVSPFGKTDTASVLLESIGYIRFLQSQIEALSLPYLGNGSLGGVGNIKNQQQQYVQGEKNCFFPEHPGQLLNENCLKRKALEQDCEEEEEEKKDLRSRGLCLVPVSCTLQVGSENGADYWNPAFGGGYQ 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05678 351 FunFam transcription factor bHLH68 isoform X1 204 257 - -
Trre8g05678 351 Coils Coil 293 320 - -
Trre8g05678 351 Gene3D - 201 256 IPR036638 GO:0046983
Trre8g05678 351 CDD bHLH_AtbHLH_like 205 254 IPR045239 -
Trre8g05678 351 MobiDBLite consensus disorder prediction 147 187 - -
Trre8g05678 351 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 197 246 IPR011598 GO:0046983
Trre8g05678 351 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 207 257 IPR036638 GO:0046983
Trre8g05678 351 MobiDBLite consensus disorder prediction 147 205 - -
Trre8g05678 351 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 77 333 - -
Trre8g05678 351 MobiDBLite consensus disorder prediction 27 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05678 Trre-Chr8 58017860 58021566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05678 1 292 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 39.628 1.01e-53 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05678 - - psat:127105731 455.292