Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05676 ATGTCTGTGCCAGTGGAACAAGGTTATGGTGGTTGTTTGAAAGATGTTCCTTCTTCAATGGAAACTACTGAGAGGAACATTGGATTGAACCTCAAAGCTACTGAACTGAGACTTGGGTTACCAGGGTCTGAATCTCCTGAGAGAGAAAATGGTGGGTTGTCTATGCTTAAGAGTTTGGTGTCTGGTGCTAAAAGGGGTTTCTCTGATGCTATTGATGGAGGTTCTGGTAAATGGGTTCTGTCTGGAAATGGTGGATCTGATGTGGGGTTGTGTAAAGATGGAAACTTGTTCTCTCCTAAAGCTAAGGGTGTTGGTGTTGGTGAATGCAACAACCAACAAAACCCTTTCTCTGCTGCTTCAGTTGTTAAAGAAACTGTTCCTCACTCTCCAAAAACTTTGCATGACAACAAACCACAGATTTCTTCTGCTCCTTCTGCAAAGGCGCAAGTTGTAGGATGGCCACCAATCCGATCTTTCAGGAAGAACTCAATGGCTACTCAGCCTCAAAAGAATGATGCTGATGCAGAAGCCAAATCTGAATGCCTCTATGTAAAAGTCAGCATGGAAGGTGCTCCATACTTGAGGAAAGTGGATCTGAATGGTTTTAGCTCTTATAGGGAACTCTCTTCAGCACTCGAAAAGATGTTCAGTTGTTTTACAATCAGTCAGTGTGGCTCATATGGAGTTTCTTGTCAAGAAAAAAATTTAAGTGAAAGTAGATTGGTGGATCTCCTTCATGGTTCGGAATATGTGCTTACCTATGAAGACAAGGACGGTGATTGGATGCTAGTTGGCGATGTTCCATGGGAAATGTTCACCGAGTCTTGCAAGAGGCTGAGGATAATGAAGAGTTCTGAAGCAATTGGACTAGCACCTCGAGCCATGGAAAAGTGCAAAAGTCGCAACTAG 909 0.4323 MSVPVEQGYGGCLKDVPSSMETTERNIGLNLKATELRLGLPGSESPERENGGLSMLKSLVSGAKRGFSDAIDGGSGKWVLSGNGGSDVGLCKDGNLFSPKAKGVGVGECNNQQNPFSAASVVKETVPHSPKTLHDNKPQISSAPSAKAQVVGWPPIRSFRKNSMATQPQKNDADAEAKSECLYVKVSMEGAPYLRKVDLNGFSSYRELSSALEKMFSCFTISQCGSYGVSCQEKNLSESRLVDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCKRLRIMKSSEAIGLAPRAMEKCKSRN 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05676 302 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 29 289 IPR003311 GO:0005634|GO:0006355
Trre8g05676 302 ProSiteProfiles PB1 domain profile. 181 284 IPR000270 GO:0005515
Trre8g05676 302 MobiDBLite consensus disorder prediction 132 146 - -
Trre8g05676 302 SUPERFAMILY CAD & PB1 domains 179 283 - -
Trre8g05676 302 MobiDBLite consensus disorder prediction 126 146 - -
Trre8g05676 302 Pfam AUX/IAA family 34 293 IPR033389 -
Trre8g05676 302 FunFam Auxin-responsive protein 176 294 - -
Trre8g05676 302 Gene3D - 175 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05676 Trre-Chr8 57968829 57970878 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05676 184 292 B3 DNA Binding Superfamily AT4G23980 32.110 3.51e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Trre8g05676 AUX_IAA 1.1e-85 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05676 K14484 - gmx:100803754 432.95