Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05670 ATGGAACGCATCGTTGGCGGCAACTACAAGCTCGGCCGCAAGATCGGAAGTGGATCCTTCGGTGAAATCTATCTCGCTACGCATATTGATACCTTTGAAATCATCGCCATCAAAATCGAGAACACTAAAACAAAGCATCCACAATTACTTTACGAGGCGAAGCTCTACAATATTCTTCAAGGAGGAAGTGGCATTCCAAGTATAAAATGGTTTGGAGTAGACGGCGAGGACAACGTGCTTGCTATCGATTTATTAGGGCCTAGTCTTGAGGATCTTTTTGTGTATTGTGGAAGGAAGTTTTCATTGAAGACTGTGTTAATGTTAGCTGATCAAATGATTACTAGAATAGAATATGTGCATTCAAAAGGATATTTACATAGGGATATTAAACCCGATAACTTCCTCATGGGACTTGGTCGGAAGGCCAACCAGGTTTACATAATTGATTTCGGGCTAGCAAAACGGTATCGGGACTCCACAACCCATCGCCACATTCCTTACAGGGAGAACAAAAGCTTAACAGGGACTGCTCGATATGCAAGTTGCAATACTCATCTTGGGATTGAGCAAAGTAGACGGGATGATTTGGAATCACTAGGATATGTACTTCTCTACTTCCTTAGGGGAAGCCTTCCTTGGCAAGGTCTAAAGGCTGCAACAAAGAAACAGAAGTATGATAAAATATGTCAGAAGAAGGTATCAACTCCTATTGAGGTACTATGCAAATCTCATCCCGTAGAGTTTGCTTCATACTTCCATTACTGCCACTCATTGACGTTTGATCAGCGGCCTGATTATGGGTTCTTGAAGCGCCTATTTAGAGACCTATTTGCTCGGGAAGGTTGTGCATTTGATTTTGTTTTTGATTGGACCATTTTAAAGTATCAGCAATCACAGAAGCATATAGTGCAGCCTTCCTTATCTCCTGTTCCTGGTGCAATTAACCGTCATGCAGTCCCAATGGATGTTGACAACCATCAAGATTTTAATGCATATTCAGTGCTTGGTGAAGAGCGAATTAGATCCGGAAATGCCACTGGTTCTGGTGGGAAAGTTCAGTTTAAATCACCAGCCGGTAGAAACTTGAGTTCTGAAAATCCTCTTGACAAGAATATTTTTGGTGAAGCAAATATGGCCTCTACTTCGTATTCCCCGGCTGGTACTTCAAAAAGGAACCCCTTGACCCCTGCATCGTCTGCTGAACCTTCCGACCGTGGACATGGGCAAGGCAGTAAAATTGGCCCATCAAGTAGCTGGATGTCATCTCTGCAGCGCATATCTTCTTCCAAATGA 1293 0.4292 MERIVGGNYKLGRKIGSGSFGEIYLATHIDTFEIIAIKIENTKTKHPQLLYEAKLYNILQGGSGIPSIKWFGVDGEDNVLAIDLLGPSLEDLFVYCGRKFSLKTVLMLADQMITRIEYVHSKGYLHRDIKPDNFLMGLGRKANQVYIIDFGLAKRYRDSTTHRHIPYRENKSLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQGLKAATKKQKYDKICQKKVSTPIEVLCKSHPVEFASYFHYCHSLTFDQRPDYGFLKRLFRDLFAREGCAFDFVFDWTILKYQQSQKHIVQPSLSPVPGAINRHAVPMDVDNHQDFNAYSVLGEERIRSGNATGSGGKVQFKSPAGRNLSSENPLDKNIFGEANMASTSYSPAGTSKRNPLTPASSAEPSDRGHGQGSKIGPSSSWMSSLQRISSSK 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05670 430 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g05670 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Trre8g05670 430 MobiDBLite consensus disorder prediction 342 430 - -
Trre8g05670 430 FunFam Casein kinase I isoform delta-like 1 339 - -
Trre8g05670 430 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g05670 430 Pfam Protein kinase domain 9 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g05670 430 MobiDBLite consensus disorder prediction 346 430 - -
Trre8g05670 430 Gene3D Transferase(Phosphotransferase) domain 1 1 310 - -
Trre8g05670 430 CDD STKc_CK1_delta_epsilon 9 281 - -
Trre8g05670 430 PANTHER CASEIN KINASE-RELATED 9 376 - -
Trre8g05670 430 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Trre8g05670 430 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05670 Trre-Chr8 57936708 57939605 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05670 9 213 MAP Kinase Kinase Kinase AT1G54960 27.727 1.07e-13 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Trre8g05670 Pkinase 2.6e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05670 K08960 - gmx:100800342 764.992