Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05660 ATGGGTGAGTGTGAGATACCTCTACTTAGCTGCTCAGAGAAAGAAGGTGCTACTACTACTACTACTAAAATTTTACCTTCGGAGCTCCATTTACCCGACCCGGTTGAAAAGAGGCCCAAACGACCAAGAGAAAGTAACCACCCGGTTTACAGAGGGGTTAGAATGCGGGCATGGGGAAAATGGGTATCCGAAATCCGCGAGCCACGTAAGAAGAATCGGATCTGGCTCGGAACCTTCGCCACACCGGAGATGGCGGCTCGAGCTCATGACGTGGCAGCTCTTGCAATCAAAGGTAGCTCAGCCATCCTCAACTTCCCTGAACTCGCCGATTCAATGCCCCGACCCGATTCAAACTCTCCTCGTGATGTTCAAGCCGCCGCTGTCAAAGCCGCTGCAATGGAAGTTCCCGATCAACAACAAACATCATCCACTTCTTCATCTTCTTCCTCTACACTGTCGCAATCTTCGTCGTCTTGTTCGTTAGCAATTTCATCCTCCTCCGGTGAACCGTCAACACCAGACGACCTTGGTGAAATAGTGGAACTACCAGCATTAGGAACGAGTTTCGAACTACCCGACCCGAATAATATGATATTTTCTGACCCGGTTGATGGATCATGGACTTGGTATAATAATACTCACAGCATTTACGATGAAAGGGATTATTTTAAGGACTTGGATCAGATTTCAATGCAAGAAGACAATACTGAAAGTATTACTAGTATGATTCTTTGTGGTTATGAGGGTTCTTTGTGGCAGCAACGTTAA 768 0.4688 MGECEIPLLSCSEKEGATTTTTKILPSELHLPDPVEKRPKRPRESNHPVYRGVRMRAWGKWVSEIREPRKKNRIWLGTFATPEMAARAHDVAALAIKGSSAILNFPELADSMPRPDSNSPRDVQAAAVKAAAMEVPDQQQTSSTSSSSSSTLSQSSSSCSLAISSSSGEPSTPDDLGEIVELPALGTSFELPDPNNMIFSDPVDGSWTWYNNTHSIYDERDYFKDLDQISMQEDNTESITSMILCGYEGSLWQQR 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05660 255 CDD AP2 50 108 IPR001471 GO:0003700|GO:0006355
Trre8g05660 255 SUPERFAMILY DNA-binding domain 49 107 IPR016177 GO:0003677
Trre8g05660 255 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Trre8g05660 255 MobiDBLite consensus disorder prediction 15 47 - -
Trre8g05660 255 MobiDBLite consensus disorder prediction 30 47 - -
Trre8g05660 255 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 37 189 - -
Trre8g05660 255 Pfam AP2 domain 48 98 IPR001471 GO:0003700|GO:0006355
Trre8g05660 255 FunFam Ethylene-responsive transcription factor 2 48 107 - -
Trre8g05660 255 Gene3D AP2/ERF domain 49 107 IPR036955 GO:0003700|GO:0006355
Trre8g05660 255 MobiDBLite consensus disorder prediction 135 154 - -
Trre8g05660 255 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Trre8g05660 255 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
Trre8g05660 255 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
Trre8g05660 255 MobiDBLite consensus disorder prediction 111 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05660 Trre-Chr8 57881948 57882715 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05660 36 204 AP2-EREBP Transcription Factor Family AT5G11590 64.162 1.06e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre8g05660 AP2 5.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05660 K09286 - gmx:100778201 273.478