Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05652 ATGTCCTCGTCGTCGATTCAGCCGTTATTGCCCGACGAAAATGAAATCGAGAAGGTCTGCTCTGATAAGATCGTTGTCGAACCCCCCAAATTCTTGGATCTCTTTCCCTCCTTTGACTACGATGACTATGTACTTGAACTTACTGATTATAACTGTGACGAGACTGATCATGACATTGATTTTGGTGATGATGATGATGATGATGATGATCTAACACTTATTCCTGGTATGGTTGTACCTCCCTCTATGTTGGATTTTACAAGGGATATGATTGATAAGTCCGATGATCAAACTGTTCTGGCAACCTACCTCCCGCGTAAACTAAAAGCGGACTCTGATTTGCTTGAGATTTTCAAGTCTATTGGCGGTGTGAGAAGTGGCAAACTTGCTATTAATCAAAAAAGTGGCCGAAATTGGGGATTTGGCTTTGTTACCTTTGTCACCAAGGAAGATGCTCAGAAGGCTATTGAAAAACTCAATGGGCGGGTGTTGGACGGACGCACCATGAAAGTTGATTGGGTCACCCCAAGAAAAATCTAA 540 0.4259 MSSSSIQPLLPDENEIEKVCSDKIVVEPPKFLDLFPSFDYDDYVLELTDYNCDETDHDIDFGDDDDDDDDLTLIPGMVVPPSMLDFTRDMIDKSDDQTVLATYLPRKLKADSDLLEIFKSIGGVRSGKLAINQKSGRNWGFGFVTFVTKEDAQKAIEKLNGRVLDGRTMKVDWVTPRKI 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05652 179 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 170 IPR000504 GO:0003723
Trre8g05652 179 Gene3D - 62 179 IPR012677 -
Trre8g05652 179 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 176 IPR000504 GO:0003723
Trre8g05652 179 SMART rrm1_1 98 172 IPR000504 GO:0003723
Trre8g05652 179 SMART rrm2_1 98 172 IPR003954 GO:0003676
Trre8g05652 179 SUPERFAMILY RNA-binding domain, RBD 103 178 IPR035979 GO:0003676
Trre8g05652 179 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 111 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05652 Trre-Chr8 57812471 57813367 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05652 67 177 Eukaryotic Initiation Factors Gene Family AT3G11400 38.843 2.35e-19 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05652 - K03248 tpra:123898674 140.584