Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05649 ATGCCGCTTAATTCTGTAACAGCAGTTTCCATAGATTTGGAAACGTTTGATTTGGAGCAGGCTCTTGAAATGGCCTCTAGAGAACCACTCTGCTGGTTTGTTGCATGGAAGAACTTTGTCACCAACTTACCTGCTGTTGTTGTGGATGTCACTAAGGATGATGTTTGCTCTATTTGTATGGAAGGCTTTGATGAAGAAGGAGATGGAAACAAACGAGTTCCTTGCGGCCATGTTTACCACTCTAACTGTATCACCTTATGGCTCCATCGCTGCAACTCTTGCCCTCTTTGTCGCCGTCATATCTCCCTTGATCAGCTGGATCCTATCTTGTGA 333 0.4474 MPLNSVTAVSIDLETFDLEQALEMASREPLCWFVAWKNFVTNLPAVVVDVTKDDVCSICMEGFDEEGDGNKRVPCGHVYHSNCITLWLHRCNSCPLCRRHISLDQLDPIL 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05649 110 PANTHER SI:CH211-59O9.10 41 102 - -
Trre8g05649 110 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 107 IPR013083 -
Trre8g05649 110 ProSiteProfiles Zinc finger RING-type profile. 56 98 IPR001841 -
Trre8g05649 110 SUPERFAMILY RING/U-box 49 104 - -
Trre8g05649 110 Pfam Ring finger domain 55 98 IPR001841 -
Trre8g05649 110 SMART ring_2 56 97 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05649 Trre-Chr8 57804996 57805328 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05649 49 103 C3H Transcription Factor Family AT1G68180 47.273 3.08e-11 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05649 K22378 - gmx:102669154 129.028