Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05648 ATGGCACAGTTTCTTCCCTGTGACTCAGAAGGTGTTTGCATGGTTTGCAAAAACAAACCTCTTGAAACTGAAACTCTTGTTTGCAGAACATGCGCAACTCCATGGCATGTTCCATGTCTTCCTCTTCTTCCAACTACAATCCTTGATTGGGAATGTTCCGATTGTTCCCAACCTGTTGATAACATCAACCATGTCGCCGATAAACGTCAAGAATTGGTTGGTGGATCGTCTAAATCAACTGCTGAAAATACCAACAGACGCAGTAATGGTTTGCCTGATCTCTTTGATGGTAGCGTTAACTGCTCCTTCTGCATGCAGTTGCCTGAGAGACCCATCACTACACCATGTAGCCACAATTTTTGTCTGAAGTGTTTCGAAAAATGGATCAAGCAAGGAAAACGAACTTGTGCGAATTGTAGGGCTGCAATTCCAGCCAAGTTCGCGAGTAATCCACGAATTAACTCCCAGCTGGCGGCTGGGATTTGGATGGCAAAGCTAGCAAGATCGGAGGGTGATGGGGGAAGCAGTGTTCCAAAAGTTTATCACACTGTTGACAATGATGAGCGTCCTGACACTGCTTTCACTACTGAGAGAGCAAAGAAAACAGGAAAGGCTAATGCCTGCAGTGGAAAAATCTTTGTGACAATTCCAAAAGATCATTTTGGACCGATTTCTGCCGAGAATGATCCAACAAGGAACCGTGGGGTTCTTGTTGGTGATACATGGGAGGATAGGATGGAATGTAGGCAGTGGGGTGCTCATTTTCCCCATGTTGCTGGCATTGCTGGTCAGAGTACTCATGGTGCTCAGTCTGTTGCTCTTTCCGGAGGTTATATTGACGACGAGGATCATGGTTATCCTGTTCGTGTTGTTAGGTCCCACAAGGAGAAACGTTCCTCTTATGCACCGGAAGAAGGAGTGAGATACGATGGAGTTTATAGAATTGAGAAATGTTGGCGCAAACTTGGAATACAAGGTCATAAGGTTTGCAGGTATTTGTTTGTGAGGTGTGACAATGAGGCAGCTCCATGGGCAAGTAATTTTTCCGGAGACCGTCCCCGGCCACTGCCTATAATTGAGGAGCTTAAGGATGCAGTTGATGTTACTGAAAGAAAGGGTGATCCATCATGGGATTTTGATGAGGAAAAGGGCTGCTGGTTGTGGAAGAAGCCTCCACCACTAAGTAAGAAGCCGGTTAACATTGTGAATCCTAAAGATGGAAGTAAAATAAAAGTTGTTAAGCCAAAAGCAAAAAAGGTGTCCTTCAAAATCAAGGATAGGCTATTGAAAGAGTTTGGTTGCAATATATGTCGGAAGGTGTTGGCTTCCCCTCTTACTACACCTTGTGCTCACAACTTCTGCAAAGTCTGCTTGGAGGGTGCCTTTTCTGGCCAAAGTTATATCAGGAATAGAACAACCCAAAGCGGGCGCTCTTTGCGGACACAGAAGAACATTATGAAATGCCCTACTTGCTCAATTGACATAGCTGATTATCTTCAGAATCCCCAGGTATCCAGAGAAGTGGGGAAAGCAGTTGCAAGGATGATAGCCCTTGCACTTGGTTTGGATGCTAATTTTTTTTATAAACCAGAAACCTTTGGAGAGCCCATTGTGATTGTGCGCCCGCTACACTATCAAGATAAAATCCCGGATCCCTCACAAGGGCTATACGCAGCTGGAGCTCATACCGACTATGGCTTGATTACTCTGTTGGCAACAGATGGTGTCCAGGGTCTTCAAATATGCAAGAATAAGGATGTTGAACCTCAGATATGGGAGCATGTGACACAATTGAAGGGGTTAGTCCTTATGGTGCTGTAG 1821 0.4498 MAQFLPCDSEGVCMVCKNKPLETETLVCRTCATPWHVPCLPLLPTTILDWECSDCSQPVDNINHVADKRQELVGGSSKSTAENTNRRSNGLPDLFDGSVNCSFCMQLPERPITTPCSHNFCLKCFEKWIKQGKRTCANCRAAIPAKFASNPRINSQLAAGIWMAKLARSEGDGGSSVPKVYHTVDNDERPDTAFTTERAKKTGKANACSGKIFVTIPKDHFGPISAENDPTRNRGVLVGDTWEDRMECRQWGAHFPHVAGIAGQSTHGAQSVALSGGYIDDEDHGYPVRVVRSHKEKRSSYAPEEGVRYDGVYRIEKCWRKLGIQGHKVCRYLFVRCDNEAAPWASNFSGDRPRPLPIIEELKDAVDVTERKGDPSWDFDEEKGCWLWKKPPPLSKKPVNIVNPKDGSKIKVVKPKAKKVSFKIKDRLLKEFGCNICRKVLASPLTTPCAHNFCKVCLEGAFSGQSYIRNRTTQSGRSLRTQKNIMKCPTCSIDIADYLQNPQVSREVGKAVARMIALALGLDANFFYKPETFGEPIVIVRPLHYQDKIPDPSQGLYAAGAHTDYGLITLLATDGVQGLQICKNKDVEPQIWEHVTQLKGLVLMVL 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05648 606 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 80 IPR013083 -
Trre8g05648 606 Pfam RING-type zinc-finger 434 475 IPR027370 -
Trre8g05648 606 SUPERFAMILY RING/U-box 424 499 - -
Trre8g05648 606 Pfam Zinc finger, C3HC4 type (RING finger) 100 144 - -
Trre8g05648 606 Gene3D - 460 605 IPR027443 -
Trre8g05648 606 ProSitePatterns Zinc finger PHD-type signature. 13 55 IPR019786 -
Trre8g05648 606 Gene3D - 202 284 IPR036987 -
Trre8g05648 606 ProSitePatterns Zinc finger RING-type signature. 449 458 IPR017907 -
Trre8g05648 606 Pfam SAD/SRA domain 284 339 IPR003105 -
Trre8g05648 606 Gene3D - 285 373 IPR036987 -
Trre8g05648 606 SMART ring_2 101 139 IPR001841 -
Trre8g05648 606 SMART ring_2 434 491 IPR001841 -
Trre8g05648 606 ProSiteProfiles Zinc finger RING-type profile. 101 140 IPR001841 -
Trre8g05648 606 ProSiteProfiles YDG domain profile. 231 375 IPR003105 -
Trre8g05648 606 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 284 515 IPR045134 -
Trre8g05648 606 SUPERFAMILY Clavaminate synthase-like 505 600 - -
Trre8g05648 606 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 172 IPR013083 -
Trre8g05648 606 SUPERFAMILY FYVE/PHD zinc finger 7 59 IPR011011 -
Trre8g05648 606 SUPERFAMILY PUA domain-like 205 357 IPR015947 -
Trre8g05648 606 SMART G9a_1 226 340 IPR003105 -
Trre8g05648 606 SMART PHD_3 12 56 IPR001965 -
Trre8g05648 606 SUPERFAMILY RING/U-box 93 146 - -
Trre8g05648 606 ProSiteProfiles Zinc finger RING-type profile. 434 492 IPR001841 -
Trre8g05648 606 CDD RING-HC_ORTHRUS_rpt1 98 144 IPR047498 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05648 Trre-Chr8 57799418 57803461 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05648 5 512 C2H2 Transcription Factor Family AT5G39550 51.295 0.0 567
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05648 K10638 - gmx:100781044 745.347