Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05647 ATGGAACATCTTCCCTGTGACTCAGAAGGTGTTTGCATGATTTGCAAACAGAAGCCTCTGGAAACTGAAACTCTTGTTTGCAGAACATGCGCAACTCCATGGCATGTTCCATGTCTTCCTCTTCTTCCAACTACAATCCTTGATTGGGAATGTTCCGATTGTTCCCAACCTGTTGACAATATCAACCATGTCGCCGATGTACCTGCTCCGCCTATCGCCGGCGATCTCGTTTCCGCCATTCGCGCCATCGAGAACGATAATTCGCTTACTGATGAAGAGAAAGCGAAGAAACGTCAACAACTCGTTGGTGGATCGGCTAAATCAACAACTGAAACTACCAATAGACGCAGTAATGGTTTGCGTGATCTCTTTGATGGTAGCGTTAACTGTTCCTTTTGCATGCAGTTGCCTGAGAGACCCGTCACTACACCATGTGGGCACAATTTTTGTCTGAAGTGTTTTGAAAGATGGATTAAGCAAGGAAAACGAACTTGCGTGAATTGTAGGGCTGCAATTCCAGCCAAGATGGCGAGTAATCCACGAATTAACTCACAATTGGCGACTGGGATTCGTATGGCAAAACTCGCAAGATCGGAGGGTGATGGGGGAAGCAGTGTTACAAAAGTTTATCACACTGTTGACAATGATGAGCGTCCTGACACTGCTTTCACCACCGAGAGAGCAAAGAAAACTGGAAAGTCTAATGCCTGTAGTGGGAAAATCTTTGTGACGATTCCAAAAGATCATTTTGGACCGATTTCTGCTGAGAATGATCCAACAAGGAACCGTGGGGTTCTTGTTGGTGATACATGGGAGGATAGGATGGAATGTAGGCAATGGGGTGCTCATTTTCCTCATGTTGCTGGGATTGCTGGTCAGAGTACTCACGGTGCTCAGTCTGTTGCTCTTTCCGGAGGTTATATTGACGATGAGGATCATGGTGAGTGGTTCCTTTACACTGGAAGTGGTGGAAGGGATCTTAGTGGCAACAAAAGGACCAACAAAAATCAGTCATTTGACCAGCAGTTTGAGAACATGAATGAGGCTTTGAGACTCAGTTGTCGTAAAGGTTATCCTGTTCGTGTTGTTAGGTCCCACAAGGAGAATCGTTCCTCTTATGCACCGGAAGAAGGAGTGAGATACGACGGGGTTTATAGAATTGAGAAATGTTGGCGCAAAATTGGAATACAAGGTCATAAGGTTTGCAGGTATTTGTTTGTGAGGTGTGACAATGAGGCAGCTCCATGGACAAGTGATTTATCTGGAGACCGTCCCCGGCCACTACCTATAATTGAGGAGTTTAAGGATGCAATTGATGTTACTGAAAGAAAGGGTGATCCGTCATGGGATTTTGATAAGGAAAAGGGCTGCTGGTTGTGGAAGAAGCCTCCACCACTAAGTAAGAAGCCGGTTAACATTGTGGATCCTATAGATGGAAGTAAAATAAAAGTTGTTAGGCCAAAAGCAAAAAAGGTGTCCTTCAAAATCAAGGATAGGCTATTGAAAGAGTTTGGTTGCAATATATGCCGCAAGGTGTTGGCTTCCCCTCTTACTACACCTTGTGCTCACAACTTCTGCAAAGCCTGCTTGGAGGGTGCCTTTTCTGGCCAAAGTTATATCAGGAATAGAGCAACCCAAAGCGGATGCTCTTTGCGGACACGGAAGAACATTATGAAATGCCCTACTTGTTTAACTGACATAGCTGATTATCTTCAGAATCCCCAGGTTAACAGGGAAATGATGGGTGTCATAGAATCACTCCAGCGACAGGCTGAACAGGTGGAGGAGAGTTCTGAAGAATCAAGTGCTAAAAGTGAAGGATCAAGTGATAAAAGCAATGAAAATCTCAAGTCGGATGAGGAGACAGATGTTCCAAATCCCTGTGATTCAAGAGAAATAGTTTTGGAGGAAATTAACGAGAATGATCCTGATCCTCCACAAAAGCGGAGGAAAGGTGCTGATGGTAAGGCTGTGGTGAAAGCCGGTGAACATATTGATGGGGCAGAAGCAGAAAGCAAAGCAGTGGCTTTCAATTAG 2037 0.4482 MEHLPCDSEGVCMICKQKPLETETLVCRTCATPWHVPCLPLLPTTILDWECSDCSQPVDNINHVADVPAPPIAGDLVSAIRAIENDNSLTDEEKAKKRQQLVGGSAKSTTETTNRRSNGLRDLFDGSVNCSFCMQLPERPVTTPCGHNFCLKCFERWIKQGKRTCVNCRAAIPAKMASNPRINSQLATGIRMAKLARSEGDGGSSVTKVYHTVDNDERPDTAFTTERAKKTGKSNACSGKIFVTIPKDHFGPISAENDPTRNRGVLVGDTWEDRMECRQWGAHFPHVAGIAGQSTHGAQSVALSGGYIDDEDHGEWFLYTGSGGRDLSGNKRTNKNQSFDQQFENMNEALRLSCRKGYPVRVVRSHKENRSSYAPEEGVRYDGVYRIEKCWRKIGIQGHKVCRYLFVRCDNEAAPWTSDLSGDRPRPLPIIEEFKDAIDVTERKGDPSWDFDKEKGCWLWKKPPPLSKKPVNIVDPIDGSKIKVVRPKAKKVSFKIKDRLLKEFGCNICRKVLASPLTTPCAHNFCKACLEGAFSGQSYIRNRATQSGCSLRTRKNIMKCPTCLTDIADYLQNPQVNREMMGVIESLQRQAEQVEESSEESSAKSEGSSDKSNENLKSDEETDVPNPCDSREIVLEEINENDPDPPQKRRKGADGKAVVKAGEHIDGAEAESKAVAFN 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05647 678 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 231 426 - -
Trre8g05647 678 MobiDBLite consensus disorder prediction 91 120 - -
Trre8g05647 678 SMART ring_2 506 563 IPR001841 -
Trre8g05647 678 SMART ring_2 12 54 IPR001841 -
Trre8g05647 678 SMART ring_2 130 168 IPR001841 -
Trre8g05647 678 Pfam RING-type zinc-finger 506 560 IPR027370 -
Trre8g05647 678 SMART PHD_3 11 55 IPR001965 -
Trre8g05647 678 MobiDBLite consensus disorder prediction 102 120 - -
Trre8g05647 678 MobiDBLite consensus disorder prediction 592 627 - -
Trre8g05647 678 Pfam SAD/SRA domain 263 411 IPR003105 -
Trre8g05647 678 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 493 616 IPR013083 -
Trre8g05647 678 FunFam Predicted protein 92 195 - -
Trre8g05647 678 SMART G9a_1 255 412 IPR003105 -
Trre8g05647 678 SUPERFAMILY RING/U-box 124 176 - -
Trre8g05647 678 ProSitePatterns Zinc finger RING-type signature. 521 530 IPR017907 -
Trre8g05647 678 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 65 IPR013083 -
Trre8g05647 678 SUPERFAMILY RING/U-box 498 589 - -
Trre8g05647 678 CDD RING-HC_ORTHRUS_rpt1 127 173 IPR047498 -
Trre8g05647 678 SUPERFAMILY FYVE/PHD zinc finger 5 58 IPR011011 -
Trre8g05647 678 Pfam Zinc finger, C3HC4 type (RING finger) 129 173 - -
Trre8g05647 678 ProSiteProfiles Zinc finger RING-type profile. 506 563 IPR001841 -
Trre8g05647 678 MobiDBLite consensus disorder prediction 633 658 - -
Trre8g05647 678 ProSiteProfiles Zinc finger RING-type profile. 130 169 IPR001841 -
Trre8g05647 678 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 3 607 IPR045134 -
Trre8g05647 678 Coils Coil 577 604 - -
Trre8g05647 678 ProSitePatterns Zinc finger PHD-type signature. 12 54 IPR019786 -
Trre8g05647 678 Gene3D - 231 426 IPR036987 -
Trre8g05647 678 SUPERFAMILY PUA domain-like 234 429 IPR015947 -
Trre8g05647 678 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 195 IPR013083 -
Trre8g05647 678 ProSiteProfiles YDG domain profile. 260 408 IPR003105 -
Trre8g05647 678 MobiDBLite consensus disorder prediction 588 658 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05647 Trre-Chr8 57794098 57797685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05647 3 597 C2H2 Transcription Factor Family AT5G39550 59.113 0.0 719
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05647 K10638 - gmx:100786796 946.036