Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05643 ATGTGCCGGATGGTTCAGAAGTTAGTAAGCACAGTGAAACAAATGGACCCCAAAGATCCTTTTCGAGTTGATATGACTGATAAGCTTTTGGAAAAACTTTACAATATAGGTGTGATTCCAACAAGGCAAAGTATCACACTTTGTGAACGCTTAACTGTGTCATCCTTCTGCAGACGGAGGCTCGCAACTGTTTTGGTGAAAATGAAATTTGCTGAGCATTTGAAAGAAGCTGTAACGTATATTGAGCAGGGGCATGTTCGAGTTGGTCCAGATACAATTACAGATCCAGCTTTTCTTGTTACTAGAAACATGGAAGACTTCATTACGTGGGTGGATTCATCCAAGATAAAGATTTAA 357 0.3978 MCRMVQKLVSTVKQMDPKDPFRVDMTDKLLEKLYNIGVIPTRQSITLCERLTVSSFCRRRLATVLVKMKFAEHLKEAVTYIEQGHVRVGPDTITDPAFLVTRNMEDFITWVDSSKIKI 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05643 118 Pfam S4 domain 59 105 IPR002942 GO:0003723
Trre8g05643 118 Gene3D - 60 118 IPR036986 GO:0003723
Trre8g05643 118 PANTHER 30S 40S RIBOSOMAL PROTEIN 6 110 IPR022801 GO:0003735|GO:0015935|GO:0019843
Trre8g05643 118 SUPERFAMILY Alpha-L RNA-binding motif 12 116 - -
Trre8g05643 118 SMART s4_6 59 117 IPR002942 GO:0003723
Trre8g05643 118 CDD S4 59 117 - -
Trre8g05643 118 ProSiteProfiles S4 RNA-binding domain profile. 59 117 - -
Trre8g05643 118 Pfam Ribosomal protein S4/S9 N-terminal domain 1 57 IPR001912 GO:0019843
Trre8g05643 118 FunFam U3 small nucleolar ribonucleoprotein IMP3 59 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05643 Trre-Chr8 57765840 57767212 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05643 15 100 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 32.184 9.05e-10 52.0