Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05639 ATGGGTAAAACCATAAGGTGGTTCAAGAGTTTGTTTGGGATAAAGAAAGACAAAGATAATTCAAATTCAAATTCTTCAACCAACAAATTGAATCCTCCTTCTTTTGAGGCTTTCTCAAAGAGAGATTCAAGAGGTTTGTGTCATAATCCAGCTACTATACCACCCAACATTTCACCTGCAGAAGCTGCTTGGGTTCAATCCTTCTATACAGATTCCGAAAAGGAGCAAAACAAGCATGCCATTGCGGTCGCAGCTGCCACGGCAGCAGCTGCAGATGCTGCCGTGGCAGCTGCTCAAGCTGCCGTGGCTGTCGTTAGACTAACCAGCCACGGCAGAGACACAATGTTCGGTGGTGCACACCAGAAATATGCAGCTGTCAAGATTCAAACCACATTTAGGGGTTTCTTGGCAAGAAAAGCATTGAAAGCATTAAAGGGTTTGGTAAAGTTACAAGCACTAGTAAGAGGGTACTTAGTGAGGAAGCAAGCAACAGCAACACTACACAGTATGCAAGCACTGATTAGAGCACAAGCAACAGTAAGGTCTCATAAATCTCGTGGACTCATCATAAACACAACAAAGAATGAAACACATAACAACAGATTTCAAACACAAGCAAGAAGATCCACGGAAAGGTACAATCACAATGACAATAATAGGAATAATGAGTACACAGGTTCAATTCCAATTCATAGTAGAAGATTATCATCTTCTTTTGATGCTACTGTGAATAACAGTTATGATATTGGAAGTCCTAAAATAGTAGAAGTTGATACTGGTAGACCAAAATCAAGGTCTAGAAGGAGTAACACATCAATTTCCGATTTTGGCGATGACCCGTCATTTCAAACACTTTCATCTCCACTACCAATTACACCTTCTCAGTTATTCATTCCAAATCAAAGAAATTTCAATGAAACAGAATGGGGAATAACAGGGGAAGAATGCAGATTTTCAACCGCGCAGAGCACTCCGCAGTTTGCAAGTTCTTGTAGTTGTGGATTTGTTGCACCTTCCACACCTAAAACAATTTGTGGAGATAGTTTTTATGTTGGTGAGTATGGTAATTATCCTAATTACATGGCTAATACGCAGTCTTTTAAGGCGAAATTGAGGTCTCATAGTGCTCCTAAACAACGACCTGAACCGGGTCCGAAGAAGAGGCTTTCATTGAATGAATTGATGGAATCTAGAAACAGTTTGAGTGGTGTTAGAATGCAGAGATCTTGTTCACAGATTCAGGATGCTATTAACTTTAAGAATGCTGTTATGAGTAAATTTGATAAGTCCACTGAATTTGATAGAAACAACTTCACCAACCAGAGGCGGTGGTGA 1335 0.4022 MGKTIRWFKSLFGIKKDKDNSNSNSSTNKLNPPSFEAFSKRDSRGLCHNPATIPPNISPAEAAWVQSFYTDSEKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRDTMFGGAHQKYAAVKIQTTFRGFLARKALKALKGLVKLQALVRGYLVRKQATATLHSMQALIRAQATVRSHKSRGLIINTTKNETHNNRFQTQARRSTERYNHNDNNRNNEYTGSIPIHSRRLSSSFDATVNNSYDIGSPKIVEVDTGRPKSRSRRSNTSISDFGDDPSFQTLSSPLPITPSQLFIPNQRNFNETEWGITGEECRFSTAQSTPQFASSCSCGFVAPSTPKTICGDSFYVGEYGNYPNYMANTQSFKAKLRSHSAPKQRPEPGPKKRLSLNELMESRNSLSGVRMQRSCSQIQDAINFKNAVMSKFDKSTEFDRNNFTNQRRW 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05639 444 ProSiteProfiles IQ motif profile. 145 172 IPR000048 GO:0005515
Trre8g05639 444 SMART iq_5 120 142 IPR000048 GO:0005515
Trre8g05639 444 SMART iq_5 143 164 IPR000048 GO:0005515
Trre8g05639 444 Pfam Protein of unknown function (DUF4005) 333 403 IPR025064 -
Trre8g05639 444 MobiDBLite consensus disorder prediction 266 285 - -
Trre8g05639 444 MobiDBLite consensus disorder prediction 18 41 - -
Trre8g05639 444 Pfam IQ calmodulin-binding motif 124 142 IPR000048 GO:0005515
Trre8g05639 444 Pfam IQ calmodulin-binding motif 148 162 IPR000048 GO:0005515
Trre8g05639 444 Gene3D - 120 168 - -
Trre8g05639 444 PANTHER IQ-DOMAIN 5-RELATED 1 393 - -
Trre8g05639 444 MobiDBLite consensus disorder prediction 199 229 - -
Trre8g05639 444 MobiDBLite consensus disorder prediction 18 34 - -
Trre8g05639 444 MobiDBLite consensus disorder prediction 252 285 - -
Trre8g05639 444 ProSiteProfiles IQ motif profile. 121 149 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05639 Trre-Chr8 57740975 57742659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05639 1 406 IQD Protein Family AT3G16490 49.157 5.17e-93 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05639 - - mtr:11413683 714.146