Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05638 ATGACCAAAGTACAAGAATCAGAACAACAATTCATGAAATGGGTCAAATTTGTTGGTGGTCTCAAACACACTGTCTTTAGAACAGCTAAAAATAAGCTTTTTCCTTCTTACACTTTGAATGTTTATAATAAAAAATCTGGTAAAGGAGGATTTTCATCAATTCAATCTGCCATTGATTCTCTTCCCTTCATCAATCTAGTTAGAGTTGTCATTAAGGTTCATGCCGGAGTTTATACAGAGAAAGTTAGCATTCCAGCATTTAAATCATTCATAACAATAGAAGGAGCAGGTGCAGATAAAACAATTGTTCAATGGGGTGACACTGCTCAAACACCTAATCCAAGTGCAAAAGGACAGACACTAGGAACCTATGGTTCAGCAACTTTTGCAGTTAATTCACCTTATTTCATTGCTAAGAACATCACATTCAAAAACACTGCTCCAATTCCAGCACCAGGAGCAGTTGGAAAACAAGGAGTGGCATTGAGAATTTCAGCAGATAATGCAATGTTCCTTGGTTGCAAATTCTTAGGAGCACAGGACACATTATATGATCATATTGGTAGACACTATTACAAAGATTGTTATATTGAAGGCTCTGTTGATTTCATATTTGGCAATGCTCTTTCTCTTTTTGAGGGTTGTCACGTGCATGCAATAGCACAAAATACAGGAGCACTAACAGCACAAGGAAGGAGCAGTTTATTAGAAGACACGGGATTCTCGTTTGTACACTGTAAGGTCACGGGATCAGGAGCACTATACCTTGGAAGGGCTTGGGGTCCCTTCTCTAGAGTTGTCTTTGCTTACACTTACATGGATAATATCATCATTCCCAAAGGATGGTATAATTGGGGTGATCCCAACCGTGAAATGACTGTATTCTATGGACAATACAAATGCACTGGAGCAGGAGCAAGCTATGCAGGGAGGGTATCATGGTCAAGGGAGCTCACTGATGAGGAAGCTAAACCATTTATTTCACTTAGTTATATTGATGGGTCTGAATGGATTAATTCTTACTTTTGA 1029 0.3878 MTKVQESEQQFMKWVKFVGGLKHTVFRTAKNKLFPSYTLNVYNKKSGKGGFSSIQSAIDSLPFINLVRVVIKVHAGVYTEKVSIPAFKSFITIEGAGADKTIVQWGDTAQTPNPSAKGQTLGTYGSATFAVNSPYFIAKNITFKNTAPIPAPGAVGKQGVALRISADNAMFLGCKFLGAQDTLYDHIGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAQNTGALTAQGRSSLLEDTGFSFVHCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGAGASYAGRVSWSRELTDEEAKPFISLSYIDGSEWINSYF 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05638 342 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 40 339 - -
Trre8g05638 342 ProSitePatterns Pectinesterase signature 2. 197 206 IPR033131 -
Trre8g05638 342 SUPERFAMILY Pectin lyase-like 38 340 IPR011050 -
Trre8g05638 342 FunFam Pectinesterase 35 340 - -
Trre8g05638 342 Pfam Pectinesterase 44 334 IPR000070 GO:0030599|GO:0042545
Trre8g05638 342 Gene3D - 36 341 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05638 Trre-Chr8 57733863 57736945 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05638 46 338 Carbohydrate Esterase AT5G47500 50.000 9.79e-101 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05638 K01051 - gmx:100802832 627.476