Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05637 ATGTCAAATATGAATTTCATTTTCTATGTTTTAGTAGTTCTTCTAGTTCTACAAAATCCTATTGTAACACAATGTCATACCAAAGGAATTAGACCAAGGCCTTCTAATGGAATTCCATTAATATCTACCAATATGACCAAAGTACAAGAATCAGAACAACAATTCATGAAATGGGTCAAATTTGTTGGTGGTCTCAAACACACTGTCTTTAGAACAGCTAAAAATAAGCTTTTTCCTTCTTACACTTTGAATGTTTATAATAAAAAATCTGGTAAAGGAGGATTTTCATCAATTCAATCTGCCATTGATTCTCTTCCCTTCATCAATCTAGTTAGAGTTGTCATTAAGGTTCATGCCGGAGTTTATACAGAGAAAGTTAGCATTCCAGCATTTAAATCATTCATAACAATAGAAGGAGCAGGTGCAGATAAAACAATTGTTCAATGGGGTGACACTGCTCAAACACCTAATCCAAGTGCAAAAGGACAGACACTAGGAACCTATGGTTCAGCAACTTTTGCAGTTAATTCACCTTATTTCATTGCTAAGAACATCACATTCAAAAACACTGCTCCAATTCCAGCACCAGGAGCAGTTGGAAAACAAGGAGTGGCATTGAGAATTTCAGCAGATAATGCAATGTTCCTTGGTTGCAAATTCTTAGGAGCACAGGACACATTATATGATCATATTGGTAGACACTATTACAAAGATTGTTATATTGAAGGCTCTGTTGATTTCATATTTGGCAATGCTCTTTCTCTTTTTGAGGGTTGTCACGTGCATGCAATAGCACAAAATACAGGAGCACTAACAGCACAAGGAAGGAGCAGTTTATTAGAAGACACGGGATTCTCGTTTGTACACTGTAAGGTCACGGGATCAGGAGCACTATACCTTGGAAGGGCTTGGGGTCCCTTCTCTAGAGTTGTCTTTGCTTACACTTACATGGATAATATCATCATTCCCAAAGGATGGTATAATTGGGGTGATCCCAACCGTGAAATGACTGTATTCTATGGACAATACAAATGCACTGGAGCAGGAGCAAGCTATGCAGGGAGGGTATCATGGTCAAGGGAGCTCACTGATGAGGAAGCTAAACCATTTATTTCACTTAGTTATATTGATGGGTCTGAATGGATTAATTCTTACTTTTGA 1161 0.3773 MSNMNFIFYVLVVLLVLQNPIVTQCHTKGIRPRPSNGIPLISTNMTKVQESEQQFMKWVKFVGGLKHTVFRTAKNKLFPSYTLNVYNKKSGKGGFSSIQSAIDSLPFINLVRVVIKVHAGVYTEKVSIPAFKSFITIEGAGADKTIVQWGDTAQTPNPSAKGQTLGTYGSATFAVNSPYFIAKNITFKNTAPIPAPGAVGKQGVALRISADNAMFLGCKFLGAQDTLYDHIGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAQNTGALTAQGRSSLLEDTGFSFVHCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGAGASYAGRVSWSRELTDEEAKPFISLSYIDGSEWINSYF 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05637 386 SUPERFAMILY Pectin lyase-like 82 384 IPR011050 -
Trre8g05637 386 Gene3D - 80 385 IPR012334 -
Trre8g05637 386 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 80 383 - -
Trre8g05637 386 FunFam Pectinesterase 79 384 - -
Trre8g05637 386 ProSitePatterns Pectinesterase signature 2. 241 250 IPR033131 -
Trre8g05637 386 Pfam Pectinesterase 88 378 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05637 Trre-Chr8 57733731 57736945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05637 2 382 Carbohydrate Esterase AT5G47500 42.932 4.99e-101 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05637 K01051 - gmx:100802832 681.019