Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05633 ATGTCGTGGCAATCTTATGTCGATGATCACCTTCTCTGTGACATCGAAGGTAATCATCTCACTCATGCTGCTATCATCGGTCTAGACGGCAGCGTTTGGGCTCAGAGCGCTAATTTCCCTCAGTTTAAGCCTGAGGAAATAACTGCTATCAATAATGATTTTACTGAGCCTGGAACTCTTGCTCCAACTGGATTATATATTGGTGGTACTAAATATATGGTGATTCAAGGTGAACCTGGAGCTGTCATTCGAGGGAAGAAGGGTCCTGGTGGTGTTACTGTTAAGAAGACGAATATGGCCTTGGTCATTGGCATCTATGATGAACCAATGACTCCTGGTCAGTGCAACATGGTAGTTGAAAGGCTTGGTGATTATCTCGTTGAACAGGGTCTTTAA 396 0.4394 MSWQSYVDDHLLCDIEGNHLTHAAIIGLDGSVWAQSANFPQFKPEEITAINNDFTEPGTLAPTGLYIGGTKYMVIQGEPGAVIRGKKGPGGVTVKKTNMALVIGIYDEPMTPGQCNMVVERLGDYLVEQGL 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05633 131 Gene3D Dynein light chain 2a, cytoplasmic 1 131 - -
Trre8g05633 131 PANTHER PROFILIN 1 130 IPR005455 GO:0003779
Trre8g05633 131 FunFam Profilin 1 131 - -
Trre8g05633 131 Pfam Profilin 1 130 IPR005455 GO:0003779
Trre8g05633 131 CDD PROF 2 130 IPR005455 GO:0003779
Trre8g05633 131 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Trre8g05633 131 PRINTS Profilin signature 64 78 IPR005455 GO:0003779
Trre8g05633 131 PRINTS Profilin signature 40 60 IPR005455 GO:0003779
Trre8g05633 131 PRINTS Profilin signature 113 130 IPR005455 GO:0003779
Trre8g05633 131 PRINTS Profilin signature 21 30 IPR005455 GO:0003779
Trre8g05633 131 PRINTS Profilin signature 100 113 IPR005455 GO:0003779
Trre8g05633 131 SUPERFAMILY Profilin (actin-binding protein) 2 130 IPR036140 -
Trre8g05633 131 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Trre8g05633 131 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779
Trre8g05633 131 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779
Trre8g05633 131 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779
Trre8g05633 131 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779
Trre8g05633 131 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779
Trre8g05633 131 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Trre8g05633 131 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779
Trre8g05633 131 SMART prof_2 1 131 IPR005455 GO:0003779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05633 Trre-Chr8 57706540 57708002 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05633 1 131 Cytoskeleton Gene Families AT4G29350 78.626 8.20e-78 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05633 K05759 - gmx:100127411 253.447