Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05626 ATGAAGAAAACCATGATTCTGTCTTATCTCCACATCCTTCTTCTCCTCCTTCCAAATGCAGCAAAAGCTTCCATTGGTATAGGCATTGGTGTTGGGGTTGGCATTGGCATTGGCAATGGTGGTGCTGGTGCTAACACTAACACTCCATTGCCTTCAGGATCAAACCTAAACAATGCTTACACAGCTCTTCAAGCTTGGAAATCTTCAATCACTGATGACCCTTTGAAGATTCTAGACACATGGATTGGTCCTAATGTATGTTCTTATAAAGGAATCTTTTGTGACACTAGTAACACTCCTTTTGTTGCAGGAATAGATCTCAACCATGCAAATCTTCAAGGAACACTTGTTAAAGAACTCTCTTTACTATCTGATATAACACTTCTCCACCTCAACAGTAACAAATTTTCTGGTACAGTTCCTGATACATTCAAAGATTTCACCTTTCTTCAAGAACTAGACCTAAGTAATAACCAACTTTCAGGTCCTTTTCCTACAGTTACTTTAGACATGCCAAGTTTAATTTACTTGGATCTTAGATTCAATAATTTCAAAGGGTCACTTCCTGAAGAACTTTTCAATAAGAAACTAGATGCAATATTTCTCAACAACAATGAATTTGGTGGTGAAATTCCACAAAGCTTTGGTAACTCACCTGCATCAGTGATCAATTTAGCTAACAACAAATTAAGTGGAGATATACCAGCAAGTTTTGGTTTTATGAGTCCTAAGCTAAAAGAGATTCTTTTTCTTAATAATCAATTAACAGGTTGTATTCCTCAAGGTGTTGGTATATTCACAGAAATGCAGGTTCTTGATGTGAGTTTTAATTCACTTGTGGGTCATTTGCCAGATACAATATCTTGTTTGCAAGATATTGAGGTTCTTAATTTAGGACATAACAAGCTTTCTGGTGATATATCTGATGTGATATGTTCTTTGAGAAGCTTGTTGAATTTAACTGTTGCTTATAATTTCTTTTCTGGGTTTAGCCAAGAATGTACAAGGCTTTTCAATATTGGTTTTGATTTTACAGATAATTGTATTCCTGGTAGGAATATGCAGAGACCTTCACCTGAGTGTTCTGTGATCCCTGATGGTAATTTGAATTGTCTTAGAATTCCTACTCCAAAACCTCTTGTTTGTGGTACATTGGCTTCAAGAGCTTCTAATTCTAAGTACACAAATATTCATTCATCATCTCCGTGA 1209 0.3598 MKKTMILSYLHILLLLLPNAAKASIGIGIGVGVGIGIGNGGAGANTNTPLPSGSNLNNAYTALQAWKSSITDDPLKILDTWIGPNVCSYKGIFCDTSNTPFVAGIDLNHANLQGTLVKELSLLSDITLLHLNSNKFSGTVPDTFKDFTFLQELDLSNNQLSGPFPTVTLDMPSLIYLDLRFNNFKGSLPEELFNKKLDAIFLNNNEFGGEIPQSFGNSPASVINLANNKLSGDIPASFGFMSPKLKEILFLNNQLTGCIPQGVGIFTEMQVLDVSFNSLVGHLPDTISCLQDIEVLNLGHNKLSGDISDVICSLRSLLNLTVAYNFFSGFSQECTRLFNIGFDFTDNCIPGRNMQRPSPECSVIPDGNLNCLRIPTPKPLVCGTLASRASNSKYTNIHSSSP 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05626 402 SUPERFAMILY L domain-like 58 339 - -
Trre8g05626 402 FunFam Leucine-rich repeat receptor protein kinase EMS1 234 333 - -
Trre8g05626 402 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 54 378 - -
Trre8g05626 402 Gene3D Ribonuclease Inhibitor 57 217 IPR032675 -
Trre8g05626 402 FunFam Leucine-rich repeat extensin-like protein 1 60 217 - -
Trre8g05626 402 Gene3D Ribonuclease Inhibitor 218 339 IPR032675 -
Trre8g05626 402 Pfam Leucine rich repeat 127 184 IPR001611 GO:0005515
Trre8g05626 402 Pfam Leucine rich repeat N-terminal domain 57 95 IPR013210 -
Trre8g05626 402 PRINTS Leucine-rich repeat signature 150 163 - -
Trre8g05626 402 PRINTS Leucine-rich repeat signature 290 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05626 Trre-Chr8 57681664 57682872 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05626 55 364 Leucine-rich Repeat extension Gene Families AT3G24480 52.229 6.80e-105 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05626 - - gmx:100820611 601.282