Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05625 ATGAAGATTGAGGAATTGGAGGATGCAGAGTGTAGTAGAGATGAAGAAGAGAATTCCGAGAGGCAAATTGTGATGGTTGATGCAAAGAGAGCGTTGGTTGGAGCAGGTGCACGGATCCTGTTTTATCCAACACTTTTGTATAACGTGGTTCGTAATAAAATTGAAGCTGAGTTCAGGTGGTGGGATCAAATTGATGAGTTTTTGTTGCTGGGCGCAGTCCCGTTCCCTAAAGATGTTCCTCAATTGAAGAACCTTGGGGTTGGCGGTGTGATTACTTTGAATGAACCTTATGAAACTTTGGTACCATCTTCATTATATCGTGCTCACGGTATCGATCATTTGGTAATTCCAACAAGGGATTATCTCTTTGCTCCCTCATTTGTGGATATCAACCGGGCAGTGCAGTTCATTCATTATAATGCAACTTGTGGTAAAACAACGTATGTTCACTGTAAAGCTGGGAGGGGGAGGAGTACAACAATTGTGCTTTGTTATTTGGTTGAATACAAGCACATGACACCTGCTGCTGCCCTGGATTATGTGCGGTCTCGAAGACCTAGAGTGCTACTGGCACCATCACAGTGGAAGGCTGTTCAAAACTATAACAAGCAAAGACCTGTTCAAAACAATAACAAGCAAATATCGGTTCAAAACTATAACAAGCAAAGACCGTGTTCTTTACCTTACTCTCCCTCTGGGGACACGGTTCTCATAACCAAAGATGATCTTGAAGGCTATCATAGCACATCTGATACTAGTATGGAGCTGGCTATTGTTCCTAAAGTGGCAAAGACTAAACCCATGATAGCAAGACTATCTTGCCTGTTCGCATCCTTAAAAGTATCCGGTAGTAGTGTACCAATGACAAGGCGGCTGCCAGTTTCAGAGTCACGTGCTTGCTAA 903 0.4308 MKIEELEDAECSRDEEENSERQIVMVDAKRALVGAGARILFYPTLLYNVVRNKIEAEFRWWDQIDEFLLLGAVPFPKDVPQLKNLGVGGVITLNEPYETLVPSSLYRAHGIDHLVIPTRDYLFAPSFVDINRAVQFIHYNATCGKTTYVHCKAGRGRSTTIVLCYLVEYKHMTPAAALDYVRSRRPRVLLAPSQWKAVQNYNKQRPVQNNNKQISVQNYNKQRPCSLPYSPSGDTVLITKDDLEGYHSTSDTSMELAIVPKVAKTKPMIARLSCLFASLKVSGSSVPMTRRLPVSESRAC 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05625 300 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 53 203 IPR029021 -
Trre8g05625 300 PANTHER PHOSPHATIDYLINOSITOL PHOSPHATASE 1 278 - -
Trre8g05625 300 CDD PTPMT1 60 204 IPR044596 GO:0004721
Trre8g05625 300 ProSiteProfiles Dual specificity protein phosphatase domain profile. 60 207 IPR020422 GO:0006470|GO:0008138
Trre8g05625 300 Gene3D Protein tyrosine phosphatase superfamily 60 208 IPR029021 -
Trre8g05625 300 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 128 196 IPR000387 GO:0016311|GO:0016791
Trre8g05625 300 SMART dsp_5 63 204 IPR020422 GO:0006470|GO:0008138
Trre8g05625 300 FunFam Dual specificity phosphatase domain protein 60 207 - -
Trre8g05625 300 Pfam Dual specificity phosphatase, catalytic domain 80 203 IPR000340 GO:0008138|GO:0016311
Trre8g05625 300 ProSitePatterns Tyrosine specific protein phosphatases active site. 149 159 IPR016130 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05625 Trre-Chr8 57675816 57677740 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05625 19 288 Protein tyrosine phosphatase (PTP) family AT2G35680 54.054 1.55e-104 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05625 - - gmx:100817410 516.924