Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05623 ATGATGAATAATAAGATGAGCAACGTTAGTAGCTCTGATATCATAGATTCTAAGCTTGAAGAGCATCAGTTGTGTGGATCCAAACACTGTCCTCGCTGCGGACACAAGTTCGATCAAGGAAAGCCGGATTGGCTAGGTCTACCAGCAGGAGTGAAATTTGATCCAACAGATCAAGAACTCATTGAACATCTTGAAGCTAAAGTAGAGTCAAAGAACATGAAATCACACCCTTTGATAGATGAATTCATTCTCACTATTGAAGGAGAAGATGGAATTTGTTACACCCATCCTGAAAAACTTCCAGGAGTGACAAGAGATGGATTAAGCAGACACTTTTTCCATAGACCATCAAAGGCATATACAACAGGAACAAGAAAGAGGAGAAAGATTCAAACAGAAGAATGTGACTTACAAGGAACATCATCAGGTGGAGAAACAAGATGGCATAAAACTGGTAAGACAAGACCTGTTATGGTTAATGGAAAACAAAAAGGCTGCAAGAAAATTCTTGTCCTCTACACTAATTTTGGGAAGAATCGAAAACCGGAGAAGACGAATTGGGTGATGCATCAATATCATTTAGGACAACATGAAGAAGAGAAAGAAGGAGAACTTGTTGTCTCAAAGATATTTTATCAGACACAACCAAGACAGTGTAATTGGTCTGAAAATAATAATAATAATCATAGAATTGGTGCAACAACAACAATAACTGGTGAAGGAAGTGGTGGAGGAGAACCTAGTAATAATAATTATGGAAGAAGAGATAGTGGAAGTGGAAGTTCTTCTTCTAAGGAAATTGTTACTCATAATCATAGTCATGGTCACATTCATAGAGATGAAATGTCTGCTGTTGTTGGTGTTAATCCTTTAACAAGCTTCACAAATGCCTTGGATATTCAACACCTTAAATCCGATCATTTCAGCTTCCTCCCGTTTCGAAAAAGCAGCTTCGATGAGGTTGGAATAGGAGAGGGTTCTACAGCAAGAGAAATGCAAGCATCAGGAGGGTCATGTGATCAAGAAATACATGAAAGGCAACAGCATGTAGTAGTACAACATCATCAACATCATCAGAATCAGCATCAACATCAACATCAACATCAACATCAACAACATGAGATTCATGGACACCAACAGATTAATGCAAACACAGCTTTCCATATAAGTAGGCCTTCAAATCCAATCTCAACTATTATATCTCCACCTCCACTTCACCACACATCCATCATCCTTGATGATAATGCTTACCATGTCTCAGCAATCATGCTACAACAAAATGAAAATTTTCAGCAACATCAACAACAACAACATCATAAACTAGGTGGTGGTGGAAGGTCTGCATCTGGTTTAGAGGAAGTCATTATGGGGTGCACTTCAACATCGTCTGATTCTATCAAAGAGGAGTCATCTATTAGAAACCAACAAGAAGCTGAGTGGTTGAAATACTCTTCATATTGGCCAGTTGACCCTCATGACAACCCCAACCATCATCATGGGTAG 1503 0.3879 MMNNKMSNVSSSDIIDSKLEEHQLCGSKHCPRCGHKFDQGKPDWLGLPAGVKFDPTDQELIEHLEAKVESKNMKSHPLIDEFILTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQTEECDLQGTSSGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFYQTQPRQCNWSENNNNNHRIGATTTITGEGSGGGEPSNNNYGRRDSGSGSSSSKEIVTHNHSHGHIHRDEMSAVVGVNPLTSFTNALDIQHLKSDHFSFLPFRKSSFDEVGIGEGSTAREMQASGGSCDQEIHERQQHVVVQHHQHHQNQHQHQHQHQHQQHEIHGHQQINANTAFHISRPSNPISTIISPPPLHHTSIILDDNAYHVSAIMLQQNENFQQHQQQQHHKLGGGGRSASGLEEVIMGCTSTSSDSIKEESSIRNQQEAEWLKYSSYWPVDPHDNPNHHHG 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05623 500 SUPERFAMILY NAC domain 43 213 IPR036093 GO:0003677|GO:0006355
Trre8g05623 500 MobiDBLite consensus disorder prediction 235 278 - -
Trre8g05623 500 Pfam No apical meristem (NAM) protein 48 194 IPR003441 GO:0003677|GO:0006355
Trre8g05623 500 MobiDBLite consensus disorder prediction 235 268 - -
Trre8g05623 500 ProSiteProfiles NAC domain profile. 47 213 IPR003441 GO:0003677|GO:0006355
Trre8g05623 500 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 4 374 IPR044799 GO:0003700
Trre8g05623 500 FunFam NAC domain-containing protein 73 56 217 - -
Trre8g05623 500 Gene3D NAC domain 56 217 IPR036093 GO:0003677|GO:0006355
Trre8g05623 500 MobiDBLite consensus disorder prediction 430 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05623 Trre-Chr8 57663594 57669527 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05623 10 496 NAC Transcription Factor Family AT5G56620 48.594 6.46e-130 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre8g05623 NAM 2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05623 - - tpra:123915534 794.267