Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05615 ATGTCGATGATGTTTGGGGAACCACCGCATCGTACAAATCCAACCGTACACGTGCCACCATGGCCAACGATGAACAATTCAACGGCGGAGATTTTTTCTCCTTTAACCGCTAATGACGATTATTCTCAGTTTTACTTGCAAGAAGCGCTTAGCGCTCTTCAACACTATCTTCCATCTAACGAACACGACGACGCTGATTCTGACTCGGAGATTTTTCCGAGTCATGAATCGGTCGATGCATATTCCAATGATCATTTTCGCATGTTTGAGTTCAAGATTCGAAGATGCGCACGTGGAAGATCACATGACTGGACGGAGTGTCCTTTCGCTCATCCCGGCGAGAAAGCTCGCCGCCGTGACCCAAGGAAGTTTCACTATTCCGGCACTTCGTGTCCTGATTTTCGTAAAGGAAGTTGCAAGAAAGGTGATTCGTGTGAGTTTGCGCATGGAGTTTTTGAGTGCTGGCTTCATCCTGCACGTTACCGTACTCAGCCGTGTAAAGACGGTACAAGTTGCCGCCGGCGAGTTTGTTTTTTTGCTCACACGACGGAGCAACTTCGTGCTCCGACTCAACACAGTCCACGGAGTGTTAACTCTGCTGATTCATACGACGGTTCTCCTCTCCGTCTTGCGGTTGAGTCATCCTGTGTGAAAACGCTTCCGTTCATTTCTTCTCCTGGATCTGTTTCTCCGGTGGAGTCACCTCCGGTGTCTCCGATGACTCGGTCGTTGGGAAGGTCTATGGGTTCTGTGAATGTGAACGAGATGGTTGCTTCTCTAAGAAACTTGCAACTTGATAAGATGAAATCGTTACCTTCTTCTTGGAATGTTCAAATGGGTTCTCCTAGATTCGGATCTCCTAGAGGACCCATGATCCGACCCGGATTCTGTAGCTTACCTTCGACTCCTACACAGCCGCCGTGTCGCGGCGGTGTTAACCATTTTGATCTTTGGGATCAGTGCTGTGAGGAGGAGCCTGTAATGGAGAGGGTGGAATCTGGAAGAGATATAAGGGTGAAGATGTTTGAGAAACTGAGCAAAGAAAACTCTTTTGATAGATCGGGTTCGGGTATGAATTCGGGTCAGGTGGATTTTGATGAGGCTCCGGATGTTGGATGGGTTTCGGAGCTGGTGAGTCCTTTCTTGGGCTAA 1152 0.4852 MSMMFGEPPHRTNPTVHVPPWPTMNNSTAEIFSPLTANDDYSQFYLQEALSALQHYLPSNEHDDADSDSEIFPSHESVDAYSNDHFRMFEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRKFHYSGTSCPDFRKGSCKKGDSCEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTTEQLRAPTQHSPRSVNSADSYDGSPLRLAVESSCVKTLPFISSPGSVSPVESPPVSPMTRSLGRSMGSVNVNEMVASLRNLQLDKMKSLPSSWNVQMGSPRFGSPRGPMIRPGFCSLPSTPTQPPCRGGVNHFDLWDQCCEEEPVMERVESGRDIRVKMFEKLSKENSFDRSGSGMNSGQVDFDEAPDVGWVSELVSPFLG 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05615 383 MobiDBLite consensus disorder prediction 1 21 - -
Trre8g05615 383 Gene3D - 126 189 - -
Trre8g05615 383 PANTHER UNKEMPT FAMILY MEMBER 46 378 IPR045234 -
Trre8g05615 383 FunFam Zinc finger CCCH domain-containing protein 66 83 151 - -
Trre8g05615 383 ProSiteProfiles Zinc finger C3H1-type profile. 126 152 IPR000571 GO:0046872
Trre8g05615 383 SMART c3hfinal6 160 183 IPR000571 GO:0046872
Trre8g05615 383 SMART c3hfinal6 125 151 IPR000571 GO:0046872
Trre8g05615 383 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 131 150 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05615 Trre-Chr8 57547983 57549134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05615 81 270 C2H2 Transcription Factor Family AT5G12850 52.284 7.33e-58 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre8g05615 zf-CCCH 3.7e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05615 - - aprc:113867365 573.548