Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05605 ATGGGAAGAAGGGTACTGAATGATGCGTTGAGGAGTATGGTGAATGCTGAGAAGAGAGGAAAAGCTATGGTGGAGCTTAAGCCTATATCCACCGTCATTTCTTCCTTTCTCCAAATCATGAAACACCGCGGATATATCAAGGACTTTCAGGTGTATGATCCCCATAGAGTGGGGAGGATTACAGTTGAACTACAAGGTAGAATTAACGATTGCAAGGCCCTTACATACCGACAAGACCTCAAGGCAAAGGATATCGAAGCTTACAGATTGCGCACTCTTCCGACACATCAGTGGGGTTACGTTGTGATTACAACTCCTGATGGTGTTTTGGATCATGAAGAGGCTGCAAGAAGGAATGTAGGTGGTCAAGTTCTTGGTTACTTTCACTGA 390 0.4462 MGRRVLNDALRSMVNAEKRGKAMVELKPISTVISSFLQIMKHRGYIKDFQVYDPHRVGRITVELQGRINDCKALTYRQDLKAKDIEAYRLRTLPTHQWGYVVITTPDGVLDHEEAARRNVGGQVLGYFH 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05605 129 Gene3D - 69 129 - -
Trre8g05605 129 Gene3D - 2 68 - -
Trre8g05605 129 PANTHER 40S RIBOSOMAL PROTEIN S15A 1 128 IPR000630 GO:0003735|GO:0005840|GO:0006412
Trre8g05605 129 FunFam 40S ribosomal protein S15a-5 69 129 - -
Trre8g05605 129 FunFam 40S ribosomal protein S15a 1 68 - -
Trre8g05605 129 Pfam Ribosomal protein S8 6 127 IPR000630 GO:0003735|GO:0005840|GO:0006412
Trre8g05605 129 ProSitePatterns Ribosomal protein S8 signature. 99 116 IPR000630 GO:0003735|GO:0005840|GO:0006412
Trre8g05605 129 SUPERFAMILY Ribosomal protein S8 3 129 IPR035987 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05605 Trre-Chr8 57485042 57487272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05605 1 129 Cytoplasmic Ribosomal Protein Gene Family AT4G29430 81.395 2.60e-80 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05605 K02957 - gmx:100792186 244.202