Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05594 ATGAATAGACAAAAGGGTCATCATTATGATGAAGATATGAGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTAAGGTTATTGTGGTTGCTGTTAAAGCTTCAAAAGATATTTCAAAAACTGCTTTGGTTTGGGCTTTGACTCATGTTGTTCAACCTGGAGATTGCATTAAGCTTTTGGTTATCATTCCTGCACATTCATCAAGAAAAAAAGTATGGGGGTTTTCAAGATTTACTACTGATTGTGCCACTAATCACTGGACATCGCGATTAGGAACGGTTTCAGATCAGAAAGAAGATATTACAAATTCATGTTCTCAATTAGTGCTTCAACTTCATGATTTTTATGATCCAGAGAAGATAAAGATTAGAGTGAAGATTCTTTCTGGTTCTTTGTGTGGCGCAGTGGCTGCTGAAGCCAAGAGAGTGCAGTCAAGCTGGGTTATATTGGACAGAAAATTGAAAGGTGAAAAGAAATACTGTATGGACGAGCTGCATTGCAATATTGTGATTATGAAGCATTCTCACCCGAAGATTCTACGCTTGAATTTAAATAGTTCGCCTAACAAGGAACTTGGCAGAGATTGTGCATTTTCGTTGGAGCTGAATACATACACAAGAAACTTAAAAGACAATTTTGAACATTCAGATATAATTAAAGGTCCAGCAGTTACTCCTGCTAGTAGTCCAGAACAAGGATCACCACCGTTGACTGTAACTGATGTTGGAACACCGTCGATATCAAGCTCAGATCCTGGAACATCGCCATTTTTCCACTCTGATAATTACGAAAGACGGAGGAGATGTTTTCCCTTTGTTGTTCATGAGGGACTGACAAACCTCGAGGATATTGAATCTGACTCGGAGAGTGAAAAGCTAAGTTCATCGTCCAAAAGTTCGTCTTTTCAGCCATGGATTTCAAATGTAATTTGTGTAGATGGCGAGTTCTCAAAACACGAAGAAAATATTAAAAGATCTAGTGATAAGTCTTTGGTTTCTACCTATGAATCTTTGCTTCAGAAATTGACGATGTTGGATCAAGATCATATCTATGGAACGCCTAATTGTAAAATTGATGTGAACTTGAGCAAGATTGTTAGAGAAGCAATTTCACTAGCCAGAAATGCACCTCATGGACCTCCTCCATTGTGCTCTATTTGTCAACACAAAGCACCTGCATTTGGGAATCCTCCAAGGTGGTTTACATTTGCGGAACTACAGCTCGCCACAGGTGGTTTTTCCCAAGCAAACTTCTTGGCTGAAGGTGGTTTTGGTTCCGTACACCGTGGTGTCCTACCGGATGGACAAGTTGTTGCCGTCAAGCAGTATAAATTAGCCAGTACTCAAGGAGATAAAGAATTTTGCTCAGAAGTAGAAGTCTTAAGCTGCGCACAACACCGCAATGTTGTGATGCTAATTGGTTTCTGTGTTGAGGATGGAAGAAGATTGCTAGTTTATGAGTATATCTGCAATGGATCGCTCGATTCTCATCTCTACGGACGAATGCAGAATGTGCTGGATTGGTCTGCACGCCAAAAAATTGCGGTTGGAGCAGCTCGTGGTTTAAGATATCTTCATGAAGAATGTAGAGTTGGTTGCATTGTACACCGTGATTTGCGGCCTAACAATATCCTCCTCACTCACGATTTTGAAGCCTTAGTGGGAGATTTTGGACTTGCTAGGTGGCAGCCAGACGGAGATATGGGTGTGGAAACCAGGGTGATAGGAACATTTGGGTATTTAGCACCAGAATATGCTCAAAGTGGTCAAATTACTGAAAAAGCTGATGTATACTCATTTGGGATAGTATTATTGGAGCTTGTGACAGGTCGGAAAGCGGTGGATATTAGCCGTCCGAGGGGCCAACAATGCCTTAGTGAATGGGCACGCCCGTTGCTTGAAGAACAGGCCATTCATAAACTTGTAGATCCGAGCATAGGAAACTCCTATGTTGATCAAGAGGTTTATCGCATGATGCAGTGTTCCTCTATGTGCATTCGACGGGATCCTCATTTAAGGCCTCGAGCGTCTCAGGTGCTCAAGATGCTTGAAGGTGACATTCTCATGTGA 2073 0.4139 MNRQKGHHYDEDMSSSSSSSSSSSSSKVIVVAVKASKDISKTALVWALTHVVQPGDCIKLLVIIPAHSSRKKVWGFSRFTTDCATNHWTSRLGTVSDQKEDITNSCSQLVLQLHDFYDPEKIKIRVKILSGSLCGAVAAEAKRVQSSWVILDRKLKGEKKYCMDELHCNIVIMKHSHPKILRLNLNSSPNKELGRDCAFSLELNTYTRNLKDNFEHSDIIKGPAVTPASSPEQGSPPLTVTDVGTPSISSSDPGTSPFFHSDNYERRRRCFPFVVHEGLTNLEDIESDSESEKLSSSSKSSSFQPWISNVICVDGEFSKHEENIKRSSDKSLVSTYESLLQKLTMLDQDHIYGTPNCKIDVNLSKIVREAISLARNAPHGPPPLCSICQHKAPAFGNPPRWFTFAELQLATGGFSQANFLAEGGFGSVHRGVLPDGQVVAVKQYKLASTQGDKEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGRMQNVLDWSARQKIAVGAARGLRYLHEECRVGCIVHRDLRPNNILLTHDFEALVGDFGLARWQPDGDMGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGIVLLELVTGRKAVDISRPRGQQCLSEWARPLLEEQAIHKLVDPSIGNSYVDQEVYRMMQCSSMCIRRDPHLRPRASQVLKMLEGDILM 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05594 690 PANTHER OS01G0750732 PROTEIN 171 688 - -
Trre8g05594 690 SMART tyrkin_6 414 684 IPR020635 GO:0004713|GO:0006468
Trre8g05594 690 ProSitePatterns Tyrosine protein kinases specific active-site signature. 535 547 IPR008266 GO:0004672|GO:0006468
Trre8g05594 690 Gene3D Transferase(Phosphotransferase) domain 1 490 688 - -
Trre8g05594 690 MobiDBLite consensus disorder prediction 1 23 - -
Trre8g05594 690 MobiDBLite consensus disorder prediction 228 258 - -
Trre8g05594 690 MobiDBLite consensus disorder prediction 221 259 - -
Trre8g05594 690 FunFam Dual-specific kinase DSK1-like 19 174 - -
Trre8g05594 690 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 386 489 - -
Trre8g05594 690 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 490 690 - -
Trre8g05594 690 CDD STKc_IRAK 420 686 - -
Trre8g05594 690 ProSiteProfiles Protein kinase domain profile. 414 690 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g05594 690 Pfam Protein tyrosine and serine/threonine kinase 418 684 IPR001245 GO:0004672|GO:0006468
Trre8g05594 690 SUPERFAMILY Protein kinase-like (PK-like) 395 685 IPR011009 -
Trre8g05594 690 Gene3D Phosphorylase Kinase; domain 1 386 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05594 Trre-Chr8 57398014 57401356 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05594 376 680 Trihelix Transcription Factor Family AT1G68690 51.780 1.72e-103 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Trre8g05594 PK_Tyr_Ser-Thr 1.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05594 - - aprc:113855006 1156.74