Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05591 ATGGGGAGAAGAAAGTGTTCACATTGTGGTAAGATAGGACATAATTGTAGGACATGCACATCCTTCACTCTTGGAGTTGGAGGACTTCGTCTCTTTGGTGTCCAACTATCATCTAATAATAATAATTCTACCATCATCAAAAAAAGCTTTAGCATGGACAACTTTCCTTCACCATCATCTCCATCTCCATCTTCCTCATTCTCTTCATCAACATCATTAACCAATATTGATCATAATCATCTTCACAAATCTACCTCTACTAATATTGCCTATCTATCAGATTGTTTTATAGGTCCACCCCAAGAGAGGAAAAAAGGAACTTCATGGACAGAAGATGAGCATAGAATGTTTCTCGTTGGACTGGAGAAGATGGGGAAAGGAGATTGGAGAGGCATCTCTAAAAACTTCGTCCCCACAAGAACCCCTACACAAGTCGCGAGTCATGCTCAAAAATACTTTCTCCGATTGTCAACTATCAATAACAAGAAGCGACGTTCAAGTCTCTTTGACTTGGTTGGGAGAAAGAACACCAAAACAGAAGGCCAAAGACATACTAATTCAGTAGTTTTGGGTCATAAATTAAAGGATATGTATAAATGTGAAGTTGAGATTAATGATGGCACCACTTTCGTTAAAGAAGAAGAAGTAGTCAAATCAGATAAGCAGGAAATTAATTACTCTCAAGTTAATTGGCTACATAATCACTCTTCAAATTATGCAACAGTGCCTAATTTGGACCTCACACTTGCAGTTGCATCCCCTAAGAAGACTAATAAGACCACCCCAGCTGGCCCATTGCTTTTTGGCCCAATTAGTGTCACTTAA 825 0.3879 MGRRKCSHCGKIGHNCRTCTSFTLGVGGLRLFGVQLSSNNNNSTIIKKSFSMDNFPSPSSPSPSSSFSSSTSLTNIDHNHLHKSTSTNIAYLSDCFIGPPQERKKGTSWTEDEHRMFLVGLEKMGKGDWRGISKNFVPTRTPTQVASHAQKYFLRLSTINNKKRRSSLFDLVGRKNTKTEGQRHTNSVVLGHKLKDMYKCEVEINDGTTFVKEEEVVKSDKQEINYSQVNWLHNHSSNYATVPNLDLTLAVASPKKTNKTTPAGPLLFGPISVT 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05591 274 Pfam Myb-like DNA-binding domain 108 153 IPR001005 -
Trre8g05591 274 SUPERFAMILY Homeodomain-like 102 157 IPR009057 -
Trre8g05591 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 101 157 IPR017930 -
Trre8g05591 274 SMART sant 105 155 IPR001005 -
Trre8g05591 274 Gene3D - 107 160 - -
Trre8g05591 274 PANTHER TRANSCRIPTION FACTOR KUA1 3 216 - -
Trre8g05591 274 CDD SANT 108 153 IPR001005 -
Trre8g05591 274 ProSiteProfiles Myb-like domain profile. 101 153 IPR001005 -
Trre8g05591 274 FunFam transcription factor MYB1R1 107 158 - -
Trre8g05591 274 ProSiteProfiles SANT domain profile. 104 157 IPR017884 -
Trre8g05591 274 NCBIfam myb-like DNA-binding domain, SHAQKYF class 104 155 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05591 Trre-Chr8 57383407 57384681 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre8g05591 Myb_DNA-binding 3.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05591 - - cam:101500241 302.367