Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05582 ATGACACGCTGGAAACAAATCAGTCTCCGCCGTCGTTCGCTTCGTTCAGAACCTGAAGAAACAACAACAACAACCGAACCATGTGTTACTCCTCGAAGACAACCACCTTCAGGTTTTGTCTTCGTTTATGTTGGATCGGAACGACACCGTTTTGCTATCCCTGCTCGGTTTCTTAATTTTCCTGTTTTCGCTGGTCTTCTCGATGTAACCGAGGAAGAGTTTGGTTTAAGAGGTAACGGCGGTTTAGTTCTTCCTTGCCACGTGGATTTTTTCACGGAAATCGTTAAACGTCTTCATAAGAATGAACACAAGTATGGGAAACTTTCTTTGGAAGATTTTGTTAAAATGTTTTCTGACGCTTCGGTCTAG 369 0.4309 MTRWKQISLRRRSLRSEPEETTTTTEPCVTPRRQPPSGFVFVYVGSERHRFAIPARFLNFPVFAGLLDVTEEEFGLRGNGGLVLPCHVDFFTEIVKRLHKNEHKYGKLSLEDFVKMFSDASV 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05582 122 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 23 93 IPR003676 GO:0009733
Trre8g05582 122 Pfam Auxin responsive protein 3 98 IPR003676 GO:0009733
Trre8g05582 122 MobiDBLite consensus disorder prediction 1 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05582 Trre-Chr8 57298036 57298470 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05582 19 115 Calmodulin-binding Proteins AT3G43120 39.394 8.12e-15 65.1