Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05577 ATGGCCGTATCACTTTCTCTTCAACTTCCGTTCCTTTCTTCTCCGAACACCAAAACACACACTCGCCGGAAATTCGCCTGCGTTGCGGCGGCGACCAGTGAGATTCCCCTCCTCCAAGTCAACGATCTTCGAGCAAAAATCGTAGAATCAAATGTCGAAATTCTCCGAGGTGTTAATCTCACAATTAACAGAGGAGAAATTCACGCTATCATGGGAAAGAACGGTTCTGGAAAAAGCACTTTCGCTAAAGTTCTCGTTGGTCATCCAGATTATGAAGTTACAGGTGGAACCGTCGTTTTCAAAGGGGAAAATTTGCTTGAAATGGAACCTGAAGAAAGAGCGCTTGAAGGTCTTTTCATGAGTTTTCAATCACCTGTTGCTATCCCTGGTGTTTCAAATGATCAATTTCTTGTTATGGCTTATAATGCTCGAAGAAAAAAACTTGGTCTTCCTGAACTTGGACCCCTTGAGTGTTTTTCTTATTTAATGGAGAAGCTACAACTTGTTAACATGAAGCCTGACTTTCTCAATAGGAATGTCAATGAAGGGTTTAGTGGAGGTGAAAGAAAACGCAATGAAATTTTGCAGCTTGCTGTTTTGGGGGCAGATTTGGCTATTTTGGATGAAATTGATTCAGGATTGGATGTTGATGCGCTCAGGGATGTGGCAAGTGCAGTTAATAAAATTCTTACCCCGGAGAATTCTCTGTTGATGATTACTCACTATCGGAGAATTCTTGATCTTTTAAAACCTAGCCACGTCCATGTTATGGACAACGGCAAAATTGCAAGGACAGGCGACCTATCTATGGTAGATGCAATTGAGGCAGATGGATATGAACTAGTCTCTGCTTGA 855 0.4199 MAVSLSLQLPFLSSPNTKTHTRRKFACVAAATSEIPLLQVNDLRAKIVESNVEILRGVNLTINRGEIHAIMGKNGSGKSTFAKVLVGHPDYEVTGGTVVFKGENLLEMEPEERALEGLFMSFQSPVAIPGVSNDQFLVMAYNARRKKLGLPELGPLECFSYLMEKLQLVNMKPDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVASAVNKILTPENSLLMITHYRRILDLLKPSHVHVMDNGKIARTGDLSMVDAIEADGYELVSA 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05577 284 Pfam ABC transporter 55 209 IPR003439 GO:0005524
Trre8g05577 284 SMART AAA_5 64 261 IPR003593 GO:0016887
Trre8g05577 284 NCBIfam Fe-S cluster assembly ATPase SufC 38 281 IPR010230 GO:0005524
Trre8g05577 284 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 268 IPR027417 -
Trre8g05577 284 PANTHER ABC TRANSPORTER I FAMILY MEMBER 6, CHLOROPLASTIC 31 282 IPR010230 GO:0005524
Trre8g05577 284 CDD ABC_FeS_Assembly 38 279 IPR010230 GO:0005524
Trre8g05577 284 ProSitePatterns ABC transporters family signature. 184 198 IPR017871 GO:0005524|GO:0016887
Trre8g05577 284 Gene3D - 37 283 IPR027417 -
Trre8g05577 284 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 38 284 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05577 Trre-Chr8 57257336 57260459 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05577 51 278 Calmodulin-binding Proteins AT2G36910 23.967 1.34e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05577 K09013 - gmx:100811883 437.958