Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05576 ATGAGAGGAAAGGGAACGATTGTGCCACCGTGTTATTCTCGCGGCGGAAAATTTCTTCCAAGAGAGAAAGTTGATGCTACTTCATCTTCAAGATATGATGATGTGGAAGTTGACGGTAACGGTAAGAGAAATAAAAAACGTAAATGTCTTGAAGAGTTGGTTACAACAGGTCGCATCAGCGTGTTGCTGAATGATGGTCCTGCTTTGGGACGGGAATTTGATTCTCTTCCTTCAGGACCCAAAAATTACACTGCTGCTCGTGAACAGGACCAAGAGCCTGTCAAAAGGAGAAAGGCTTCCAAAAATGCAATTCAAAATCATCCTAATTGTAATACGAAAGCACCTGTGAAGAAACATGGTATGGGCAAAGGTCTGATGACAGTTTGGAGGGCAACAAATCCTGATGCCAGAAACGTTCCAGTTGGTTTTGGGTTTGCTGACCGGGAAGTTCATCTAACCTCTAATTCTAAAACACCAATGTCAACCAACAGGCCACGGAAAGCAGTAACCACAAATGCAAAACCAAGAAAGAAGATGCCAAATAGGAAAACTACATTACAGGAGAAGAGGAATCAGTTTGTGCAAAAAAGAGTGGGTGAATCAAACCAATATGTAACTCAAAACCAGCCTCCCATAGAAAAATGTGAACTTGCTTTAGATAGCTCAATATCTGAGGAGGGCGTTGATCAAATTTCATTGTTAATTGATGATGAAGAGTTAGAGCTGAGAGAGTTACAAGAAGGAACCAATCTGCTTATTTGTCCAGAGCAAATAGCTGCCAGTGGAATGCTTGGTGGCTCACTTTGTCCAGATGTGCTAGTCAAGTTCCCCCCAGGTGCCGTCAAGATGAAGAAACCTATACATTTGCAACCTTGGGACTCCTCCCCAGAACTGGTGAAGAAATTGTTTAAGGTGTTCCATTTCATTTATACGTATGCTGTAGTTGTTGATGTTTGTCCCTTCACTCTCGATGAGTTTGTTCAGGCATTTCATGATAAGGATTCAATGTTACTTGGAAAGATTCATGTGGCTCTTCTTACACTGCTTCTATCTGACATTGAAGTGGAGCTTTCTAATGGGTTTTGTCCTCATTTAAATAAGTCATGCAACTTTCTTGCGCTGCTTCACTCCGTTGAAAATCAAGAATATTCCCTTGATGTTTGGAGAAGATCTCTAAATCCTCTTACTTGGATTGAAATACTCCGTCAAGTGCTGGTAGCTGCTGGATTCGGTTCCAAGCAAGGTGCCTTACGAAGAGATGGCCTTGGCAAGGAATTGGATATTCTTGTAAACTATGGCCTGTGCCCTGGCACCTTGAAGTGTGAGTTGTTTAAAATCTTGTCAGAAGGAGGTAACAATGGGTGCAAAGTTTCTGAGCTGGCAAAGTCAATGCAGATTGCAGAATTAAACCTTGCCAGCACAACAGAGGAACTAGAGTCTTCAATATATTCCACACTTTCAAGTGATATTACATTATTTGAAAAGATTTCATCGTCTGCATATCGATTGCGTATGAGCACTGTTTCAAAGGACAATGATGATTGTGAGTCTGATACCGAGGACTCTGGGAGTGTTGATGACGAGCTCAACAACTCTGATACATGTAGCAGCGGAGATGATTTTGAAAGCGGTTCAATAAACTCTAATATAAGAAAATTGAAGCGTGATAACAATCGTAAAGTTAAACATAATAGGCTGAAAGTTTACACTGAAATTGATGAGAGTCGTGCAGGAGAAGTATGGTTGTTAGGACTGATGGACAGTGAATACTCAGATTTGAAAATTGAAGAAAAATTGGCAGCTTTGGCAGCGTTGACCGGTCTTCTTTCATCTGGATCCAGCATCAGGATGAAGGATCCGGTAAAAGTTACAGCTGATTGTAGTTCTAGTATCCAACCACGTGGTTCTGGAGCAAAAATTAAGAGATCAGTAGTAAAGAATCCTGGTTCATTTTTGTACCCAGTTGAACAAATGCAATGTATTAAAGAGGTGCACGTGAATTCTCACCCCGGTCCAGTAGATTCCTCATCGTTAGTCTCAAAATTCCATATGCAGGAGGCATCCTTTGAGAAAAGAAAAGGTTCAGATGATTCACACCCCATACAATCAGTATTTTTGGGATCTGATCGTCGGTACAATAGATACTGGCTCTTCTTAGGCCCGTGTAATGTAGATGATCCTGGCCACCGGAGGGTTTACTTTGAATCCTCTGAAGATGGCCACTGGGATGTGATTGATACAGAAGAGGCATTGTGTGCATTGTTGTCAGTTCTGGATGATAGAGGGAAACGTGAGGCTCTTCTTATTGAATCTTTGGAGAGACGACAAACGTCTCTATGCAGATATATGTCCAGGATTAAGGTTAACAATGTTGGAATGAGTTGTATGTCACATTCTGATCAGTCTGAGCTGGATAGGGTTACAGAAGATAGCTGTTCTCCAGTATCTGATGTAGACAACCTGAATCTGGCTGAGTCTTCTAGAGAATCTTTGCCGTCACCTGGGGCTGTGGTAATTGAAGCTGGGAAGAAAGCAGAGGAACAACTGCAAAAATGGATCCGTGTTCAGAAATATGATTCTTGGATTTGGAATTCATTTTATTTAGATCTCAATGTTGTAAAATATGGCAGAAGGTCTTATCTTGACTCTCTTGCCAGATGTGGGAGTTGCCATGATCTATACTGGAGAGACGAGAGACACTGTAAAATTTGCCATATGACATTTGAACTTGATTTTGACCTTGAAGAAAAATATGCGGTCCACATAGCCATGTGCAGGGAGAAAGAAGACAACAATACATTTCCGAATCATAAAGTCTTGTCATCACAGATTCAATCATTGAAAGCTGCAATTTATGCAATTGAGTCTGTTATGCCCGAAGATGCCCTGGTTGGTGCTTGGAGGAAGTCTGCCCATAATCTATGGATCAAAAGGCTTAGACGCACCTCGACTTTAGTGGAGCTTTTGCAGGTTCTTGCTGATTTTGTTGGTGCAATCAACGAGTGCTGGTTATTTCAGTGCAAATTTCCAGACGGCGTGGTTGAAGAAACGATTGCATCTTTTGCATCAATGCCCCATACTTCATCTGCTCTTGCTCTGTGGTTGGTGAAGTTAGATGCCATAATTGCTCCTTACCTCGACAGAGTCCAAACTCAGAAGAAACAGGGAAATGGTAAGCATGGTTCTTGGTGA 3192 0.4164 MRGKGTIVPPCYSRGGKFLPREKVDATSSSRYDDVEVDGNGKRNKKRKCLEELVTTGRISVLLNDGPALGREFDSLPSGPKNYTAAREQDQEPVKRRKASKNAIQNHPNCNTKAPVKKHGMGKGLMTVWRATNPDARNVPVGFGFADREVHLTSNSKTPMSTNRPRKAVTTNAKPRKKMPNRKTTLQEKRNQFVQKRVGESNQYVTQNQPPIEKCELALDSSISEEGVDQISLLIDDEELELRELQEGTNLLICPEQIAASGMLGGSLCPDVLVKFPPGAVKMKKPIHLQPWDSSPELVKKLFKVFHFIYTYAVVVDVCPFTLDEFVQAFHDKDSMLLGKIHVALLTLLLSDIEVELSNGFCPHLNKSCNFLALLHSVENQEYSLDVWRRSLNPLTWIEILRQVLVAAGFGSKQGALRRDGLGKELDILVNYGLCPGTLKCELFKILSEGGNNGCKVSELAKSMQIAELNLASTTEELESSIYSTLSSDITLFEKISSSAYRLRMSTVSKDNDDCESDTEDSGSVDDELNNSDTCSSGDDFESGSINSNIRKLKRDNNRKVKHNRLKVYTEIDESRAGEVWLLGLMDSEYSDLKIEEKLAALAALTGLLSSGSSIRMKDPVKVTADCSSSIQPRGSGAKIKRSVVKNPGSFLYPVEQMQCIKEVHVNSHPGPVDSSSLVSKFHMQEASFEKRKGSDDSHPIQSVFLGSDRRYNRYWLFLGPCNVDDPGHRRVYFESSEDGHWDVIDTEEALCALLSVLDDRGKREALLIESLERRQTSLCRYMSRIKVNNVGMSCMSHSDQSELDRVTEDSCSPVSDVDNLNLAESSRESLPSPGAVVIEAGKKAEEQLQKWIRVQKYDSWIWNSFYLDLNVVKYGRRSYLDSLARCGSCHDLYWRDERHCKICHMTFELDFDLEEKYAVHIAMCREKEDNNTFPNHKVLSSQIQSLKAAIYAIESVMPEDALVGAWRKSAHNLWIKRLRRTSTLVELLQVLADFVGAINECWLFQCKFPDGVVEETIASFASMPHTSSALALWLVKLDAIIAPYLDRVQTQKKQGNGKHGSW 1063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05576 1063 MobiDBLite consensus disorder prediction 74 119 - -
Trre8g05576 1063 MobiDBLite consensus disorder prediction 510 540 - -
Trre8g05576 1063 MobiDBLite consensus disorder prediction 154 189 - -
Trre8g05576 1063 SMART testlast3 296 355 IPR018501 -
Trre8g05576 1063 PANTHER HOMEOBOX PROTEIN SIX 187 1052 - -
Trre8g05576 1063 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 702 775 IPR028941 -
Trre8g05576 1063 MobiDBLite consensus disorder prediction 154 169 - -
Trre8g05576 1063 Coils Coil 228 248 - -
Trre8g05576 1063 MobiDBLite consensus disorder prediction 22 43 - -
Trre8g05576 1063 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 577 616 IPR028942 -
Trre8g05576 1063 ProSiteProfiles DDT domain profile. 296 355 IPR018501 -
Trre8g05576 1063 Pfam DDT domain 297 352 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05576 Trre-Chr8 57247991 57255183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05576 216 1042 Homeobox Transcription Factor Family AT5G44180 26.169 5.98e-59 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Trre8g05576 WSD 5.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05576 - - mtr:112417546 1685.23