Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05574 ATGACCACGCCAGAAGAAGGTGCCTCCGCCGCCGTCGCCGCCGCTCCGGAAGGTGATGGTGGAGAGAAGAACGGCATAAACAGTGAGCTATGGCAAGCTTGTGCTGGTCCTCTTGTCAATCTTCCTATAGCTGGAACTCATGTTGTTTACTTTCCTCAAGGCCACAGCGAACAAGTTGCAGCATCTTTGAAGAAAGATGGGGATGTGCAAGTACCAAACTATTCCAATCTTCCGTCCAAGTTACCGTGTATTCTTCACAGTCTCACCTTGCATGCAGATCCAGATACAGATGAAGTATATGCCCGGATGACACTTCAACCGGTGCCTTCTTTTGACATGGATGCCTTATTAAGATCAGATATTTCTCTCAAATCCAGCAAGACACAACCCGAGTTTTTCTGTAAACAACTGACAGCGAGTGATACGAGTACTCATGGAGGTTTCTCTGTACCTCGCCGTGCTGCAGAGAAGATTTTCCCCCCTCTTGATTTCTCTGCACAACCTCCTGCTCAAGAACTTGTCGCAAAGGATTTGCATGGTAATGTTTGGAAGTTCCGCCATATATATCGTGGGCAACCGAAACGTCACTTGCTTACAACTGGATGGAGTCTATTTATCAGTGGAAAGAAGCTTTTAGCTGGAGACTCGGTTTTATTTATACGAGATGAAAAACAGCAGTTGCTTTTGGGTATCAGACGAGCAAAAAGGCAACCGACCAATCTATCATCCTCAGTACTATCAAGCGATAGTATGCACATCGGAATTCTCGCTGCAGCAGCTCATGCTTCTGCAAACAATAGTCCCTTCACCGTGTTTTATAATCCTAGGGCCAGTCCCTCGGAGTTCGTTATTCCATTGGCCAAGTACTACAGGGCAGTATACAGCCACCAAATATCGCCTGGGATGCGCTTTCGAATGATGTTTGAAACAGAAGACTCGGGAACAAGAAGATATATGGGTACAGTTACAGGTGTCAGTGATCTGGATCCCGTGAGATGGAAAAACTCTCAGTGGCATAATTTGCAGGTTGGTTGGGATGAATCCACTGCTGGGGAAAGGCGAAGTAGGGTCTCAATATGGGAAATCGAACCTGTTACTGCTCCATTTTTCATCTGTCCGCCTCCATTCATCAGATCCAAGAGACCAAGACTACCCGGAATGCCTGATAACGAGCTATTTAATGTCAGTAACCTTTTCAAAAGTACAATGCCGTGGATTGGTGATGATATGAGTATGAAGGATCCTCAGGCTTTCCCTGGCATGAGCTTAGCTCAATGGATGAACATACAGCAAAATCCCACGCTGGCTAGCTCATTGCAACAAAATCACGTGCCTTCCATGTCTGGATCCGTTCTACACAATCTTCCTGGAGCTGATATTGCCCATCAATTGGGATTCTCTACTCAACAAATCTCTCAATCAAACAACGTAGCTTTCAATGCTCCAGGGATACTTCAGACTCCCCAACAACTCGATCACCTTCAGAAGCTATCATCCACATCTAGCGGATTTGGAACAGTCATGCAGCCGGAGCAACAGCATTCTAGACAGAACTTGGTAAATCAAACTTTACCACAGAGTCAAGTTCAGACTCATGTTCTTAATCCACAGGGTCTCGTCCAAATGAACAATATAGTTCAATCACAACAACAATCCGGTCAAAGCAATCAACTCCATAGAAGCCTCTCTCAGAATCCACTTCATCAGCAGCTTCAACAGACTATAATTGGTCAGAACCAACAGCAAAATATGATCAGATCCGCTATGCCAGATCATATTAATCAACAGTTACCTATGTCAGATAATCAAATTCGGATTCAGTTGTTACAGAAGCTTCAACAGCAACAACAAACATTCTTTGCTCAGCAATCTGCATTGCAGCAGCCTGCTCAACTTATTCAAAACCAAGAGCAGCAGAGGCAACTTTTAGATGCAACACACAACTCTAGGGCATTAACTCCCAATCAAGTGTTTGAAATTCCTCCTACACTTCAAAACTCACTGCCTGGGACTAATTCCATGATCCATCAGATGACAGATCATAGTAGCCAGAATAATGTTCAGTTCTCTCATCCATCCAAGCAACCAAAGCTTCAACACCAACCACAACAAATGCAACCCGACTTGGTTTCTAAAATGTCTAGTCATGTTGGACTTCCTCCTGCAACTACAACTAATCATTTATCTGCTTCTGGTTGCAGTACACGGACTGTAGCAACTGGAACGGGGCCATCGGTAGTTATTGATGATGTTCCATCTTGTTCCACTTCACCTTCCACAAATAACTGTGCCAATGTGCTTCCTCCAATGACGACATCCCACGGCCTTATGAGCACAATAGGGGATGACGCGGCTCAGTCTTCTGCGACGATCTTGAGCCAAAGTGCCTTAGAGACCATGTCATCCAGTGCAAATGTGGTAAAATATGTACCGCCAAAATATGAAGCTAAGCCTTCTTTAAATCACAATCAAGGGAATTTTTACCCTCAGACTTGCTTGAATGGTGGTGCTGTCCAGACAGATTGTTTGGATACGTCGTCTTCTACAACTTCAGTTGGCCTTTCTCAGAACGATACACGCTTTCATCAGAATGACAACCTGTTATCTTACAATCCACAATCAATGTTTTGTAGAGACAACATTCAAAATGTGGAAGTTCAGGCTGATGCTAGGTGCAATATTGCATATGGCAACAGCATGAATGAGCAAATGAAAATGCCACCGAATCTAGATTCTACAGTAACCAAAGGCACAACAAGGCCGGGCAAGGATTTGTCAAATAATTTCTCTTCCTCAGGCTTGCTCGGTGACTATGAAAATAACAATGATGCTCAGCCTGAACTTTCATCTTCAATGGTTTCACAAACATTTGGAGTCCCTGATATGACCTTTAATTCAATTGATTCCACCATAAATGATAGTAGTTTCTTGAATAGTGGTCCTTGGGCTCCACCGCCGCCGCCACATCAATTTCAACGGATTAGAACATATACCAAGGTATATAAACGTGGAGCTGTGGGAAGATCCATAGACATAACAAGATATTCAGGTTACGAGGAGCTTAAACATGATCTGGCTCGTAGGTTTGGTATTGAGGGACAGCTGGAGGATCGACAAAGGATAGGTTGGAAACTTGTTTATGTAGATCATGAAAATGATGTTCTGCTAGTGGGAGATGACCCTTGGGAGGAGTTTGTTAACTGTGTCCGCTGTATTAAAATACTTTCTCCTCAAGAAGTTCAACAAATGAGCATAGATGGAGATTTTGGCAACGGTGGCCTTCCAAAACAGGCTTGTAGCAGCTCTGATGGTGGGAATACTTAA 3324 0.4392 MTTPEEGASAAVAAAPEGDGGEKNGINSELWQACAGPLVNLPIAGTHVVYFPQGHSEQVAASLKKDGDVQVPNYSNLPSKLPCILHSLTLHADPDTDEVYARMTLQPVPSFDMDALLRSDISLKSSKTQPEFFCKQLTASDTSTHGGFSVPRRAAEKIFPPLDFSAQPPAQELVAKDLHGNVWKFRHIYRGQPKRHLLTTGWSLFISGKKLLAGDSVLFIRDEKQQLLLGIRRAKRQPTNLSSSVLSSDSMHIGILAAAAHASANNSPFTVFYNPRASPSEFVIPLAKYYRAVYSHQISPGMRFRMMFETEDSGTRRYMGTVTGVSDLDPVRWKNSQWHNLQVGWDESTAGERRSRVSIWEIEPVTAPFFICPPPFIRSKRPRLPGMPDNELFNVSNLFKSTMPWIGDDMSMKDPQAFPGMSLAQWMNIQQNPTLASSLQQNHVPSMSGSVLHNLPGADIAHQLGFSTQQISQSNNVAFNAPGILQTPQQLDHLQKLSSTSSGFGTVMQPEQQHSRQNLVNQTLPQSQVQTHVLNPQGLVQMNNIVQSQQQSGQSNQLHRSLSQNPLHQQLQQTIIGQNQQQNMIRSAMPDHINQQLPMSDNQIRIQLLQKLQQQQQTFFAQQSALQQPAQLIQNQEQQRQLLDATHNSRALTPNQVFEIPPTLQNSLPGTNSMIHQMTDHSSQNNVQFSHPSKQPKLQHQPQQMQPDLVSKMSSHVGLPPATTTNHLSASGCSTRTVATGTGPSVVIDDVPSCSTSPSTNNCANVLPPMTTSHGLMSTIGDDAAQSSATILSQSALETMSSSANVVKYVPPKYEAKPSLNHNQGNFYPQTCLNGGAVQTDCLDTSSSTTSVGLSQNDTRFHQNDNLLSYNPQSMFCRDNIQNVEVQADARCNIAYGNSMNEQMKMPPNLDSTVTKGTTRPGKDLSNNFSSSGLLGDYENNNDAQPELSSSMVSQTFGVPDMTFNSIDSTINDSSFLNSGPWAPPPPPHQFQRIRTYTKVYKRGAVGRSIDITRYSGYEELKHDLARRFGIEGQLEDRQRIGWKLVYVDHENDVLLVGDDPWEEFVNCVRCIKILSPQEVQQMSIDGDFGNGGLPKQACSSSDGGNT 1107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05574 1107 Pfam B3 DNA binding domain 133 234 IPR003340 GO:0003677
Trre8g05574 1107 Gene3D - 297 368 - -
Trre8g05574 1107 ProSiteProfiles B3 DNA-binding domain profile. 133 235 IPR003340 GO:0003677
Trre8g05574 1107 FunFam Auxin response factor 131 235 - -
Trre8g05574 1107 SUPERFAMILY DNA-binding pseudobarrel domain 123 262 IPR015300 -
Trre8g05574 1107 Pfam AUX/IAA family 995 1080 IPR033389 -
Trre8g05574 1107 MobiDBLite consensus disorder prediction 674 700 - -
Trre8g05574 1107 MobiDBLite consensus disorder prediction 1 24 - -
Trre8g05574 1107 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 24 1084 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre8g05574 1107 SMART B3_2 133 235 IPR003340 GO:0003677
Trre8g05574 1107 SUPERFAMILY CAD & PB1 domains 1008 1073 - -
Trre8g05574 1107 Gene3D - 990 1084 - -
Trre8g05574 1107 FunFam Auxin response factor 297 368 - -
Trre8g05574 1107 Pfam Auxin response factor 259 342 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre8g05574 1107 Gene3D - 131 235 IPR015300 -
Trre8g05574 1107 FunFam Auxin response factor 990 1084 - -
Trre8g05574 1107 CDD B3_DNA 132 224 IPR003340 GO:0003677
Trre8g05574 1107 ProSiteProfiles PB1 domain profile. 995 1079 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05574 Trre-Chr8 57228339 57233708 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05574 16 485 B3 DNA Binding Superfamily AT1G19220 67.917 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre8g05574 AUX_IAA 5.6e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05574 - - ccaj:109803454 1549.26