Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05568 ATGAACAATAAAACCATATTCATTCTATTGTTATGTCTTGTTTCATCTTATGCTGAGTCCGACACTGAATTGCTCCTCAAGGTAAAGGACAATCTAGAAAAAAATGACAATGTATTGACATCATGGAACACAACAACAACTCCTTGTGACGGCGATCATAGTAATTGGTACGGTGTTCGTTGTTATCAAGGAAAAGTTTGGGGATTGAAGCTTGAGAATATGGGGCTAAAAGGGATCATTGATGTTGATTCTCTTAGGCAATTACCATATCTTAGAACTATAAGTTTCATGAATAATGATTTTGATGGTGGTTGGCCTGAGATTAACAAACTTGTTGGTCTTAAATCGGTTTTTCTTTCGAATAACAAATTTTCTGGAGACATTCCTGGTGATGCTTTTGAAGGTATGATGTGGTTGAAGAAAATTCATTTGTCAAATAATCAGTTTACAGGTGTTATTCCACCTTCTGTGGTATTGTTGCCAAAGCTTATGGAATTGAGATTGGATGGAAACAAATTCATTGGTCCTCTTCCTCATCTTAGACAATCCAGATTGAAATCATTCAATGTAGCTAATAATCAGTTGCATGGACAAATACCAACCACACTTAGTAAAATCGCCGTTTCTTCCTTTTCCGGTAATGAAGGTTTATGTGGAGCTCCATTGGCTGCATGTACTGCAAAGAAGCCGTCAATCGCAAGTATTTGTGTGGTTGCTGTGGTTGTTTGTGTGGCACTGATTGTGATCGGAGTCACAATATTTTTCATCCTTCATCGGCGAAGAAACCAGGAGCCATCACCGGGTCTAGAGAATCCACCTTCAGGCCACCACAACAATAAAATAGGACGGGGAGATATTGGTAATGAAAGTATGAAATCAACAAGATCAGTGAGTTCCACTCACAGCAGAAGAGGTGATCAAATGAAGTTATCTTTTATAAAAGATGACAGAGAAAGATTTGATTTGCAAGAGTTGTTGAGAGCTAATGCTGAGATTTTGGGAAGTGGTTGTTATAGTTCTTCTTATAAGGCTTCGTTGACAAGTGGAACAACAATAGTTGTGAAGAGGTTTAAGCAAATGAATAATGTAGGGAAGGAAGAGTTTCAAGAACATATGAGAAGGATAGGAAGATTGAATCATCAAAATTTGATTCCTCTTGTGGCTTACTATTATAGAAAAGAGGAGAAGCTTTTGGTTACTGACTATGTTCAAAATGGAAGTCTCGCTGTTCGCCTTCATGGACATCAAGCACTAGGTGAACCAAGCCTTGATTGGCCAATAAGATTGAAGATTGTGAAAGGAATAGCAAAAGGACTTGAATATCTATACAAAGATATGCCAAGCCTAATTGCACCTCATGGAAATCTCAAATCCTCAAATGTACTTCTAACTGAAACATTTGAACCAATCCTCACAGATTATGGATTAGTACCTGTAACAAACCAAGAAATGGCAAAGGACATAATGGTAATATACAAATCACCAGAATATTTACAACAAGGAAGAATAACAAAGAAAAGTGATGTTTGGTGTCTTGGAGTATTAATATTGGAAATTTTAACCGGTAAATTTCCGGCTACATTTTTACAACAAGGTAAAGGAAGTGAGGTGAGTTTAGCAAATTGGGTTATTTCAGTAGTACCTGAGGAGTGGAATAGTTCAGTGTTTGATAAAGAAATGGGTGAAACAAAGAATGGTGAGGGTGAGATGGAAAAACTTTTGAAAATTGCATTGAGTTGTTGTGAAGTTGATGTTGATAAAAGATGTGATTTGAAAGAAGCTGTAGAGAAAATTCAACAAGTGAAAGAGAGAGATGTTCATGATGATGATGATGGTGATGACAACATTTTTACAACTGACATGAAATGA 1869 0.367 MNNKTIFILLLCLVSSYAESDTELLLKVKDNLEKNDNVLTSWNTTTTPCDGDHSNWYGVRCYQGKVWGLKLENMGLKGIIDVDSLRQLPYLRTISFMNNDFDGGWPEINKLVGLKSVFLSNNKFSGDIPGDAFEGMMWLKKIHLSNNQFTGVIPPSVVLLPKLMELRLDGNKFIGPLPHLRQSRLKSFNVANNQLHGQIPTTLSKIAVSSFSGNEGLCGAPLAACTAKKPSIASICVVAVVVCVALIVIGVTIFFILHRRRNQEPSPGLENPPSGHHNNKIGRGDIGNESMKSTRSVSSTHSRRGDQMKLSFIKDDRERFDLQELLRANAEILGSGCYSSSYKASLTSGTTIVVKRFKQMNNVGKEEFQEHMRRIGRLNHQNLIPLVAYYYRKEEKLLVTDYVQNGSLAVRLHGHQALGEPSLDWPIRLKIVKGIAKGLEYLYKDMPSLIAPHGNLKSSNVLLTETFEPILTDYGLVPVTNQEMAKDIMVIYKSPEYLQQGRITKKSDVWCLGVLILEILTGKFPATFLQQGKGSEVSLANWVISVVPEEWNSSVFDKEMGETKNGEGEMEKLLKIALSCCEVDVDKRCDLKEAVEKIQQVKERDVHDDDDGDDNIFTTDMK 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05568 622 MobiDBLite consensus disorder prediction 602 622 - -
Trre8g05568 622 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 8 605 IPR046959 -
Trre8g05568 622 Pfam Protein kinase domain 330 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g05568 622 ProSiteProfiles Protein kinase domain profile. 327 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g05568 622 Gene3D Transferase(Phosphotransferase) domain 1 403 614 - -
Trre8g05568 622 FunFam Pollen receptor-like kinase 1 403 612 - -
Trre8g05568 622 Pfam Leucine rich repeat N-terminal domain 19 61 IPR013210 -
Trre8g05568 622 Gene3D Ribonuclease Inhibitor 17 180 IPR032675 -
Trre8g05568 622 Pfam Leucine rich repeat 113 173 IPR001611 GO:0005515
Trre8g05568 622 Gene3D Phosphorylase Kinase; domain 1 292 402 - -
Trre8g05568 622 SUPERFAMILY L domain-like 19 223 - -
Trre8g05568 622 SUPERFAMILY Protein kinase-like (PK-like) 331 599 IPR011009 -
Trre8g05568 622 MobiDBLite consensus disorder prediction 289 305 - -
Trre8g05568 622 Gene3D Ribonuclease Inhibitor 183 225 IPR032675 -
Trre8g05568 622 MobiDBLite consensus disorder prediction 264 305 - -
Trre8g05568 622 FunFam pollen receptor-like kinase 1 295 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05568 Trre-Chr8 57187931 57190547 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05568 6 620 Receptor kinase-like Gene Family AT5G35390 52.038 0.0 644
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre8g05568 Pkinase 6.9e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05568 - - gmx:100804368 892.108