Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05559 ATGGGGATTTGCTTCAGCATTGAAGAAAATCAAAAACACTTTTCCATCTCCGATTCAATTTCAACAAATAAACCTAAATCAGGAAATGATTCCGGTGCTGCACGAGCGACTAATACTCCATTAGGTACTGGTTCCATGAATATCAAAGAACTTCGCGAAGGTGCTGGATACAGCAACGTTCACATTTTTACTTATCAAGAATTGAGGCTTGCTACTAAGCAGTTTCGTCCTGATTTCATTCTTGGAGAAGGTGGATTTGGTGTTGTTTATAAAGGTGTCATTGATGATACTGTTAGAACCGGTTATAAATCCACTGAAGTCGCTATTAAGGAACTTAATCGCGAAGGATTTCAAGGCGATAGGGAATGGCTTGCTGAAGTTAACTATTTGGGTCAATTCAGTCACCCAAATCTTGTGAAGCTCTTTGGATATTGCTGCGAGGATGAACACCGGTTGTTGGTCTATGAATACATGGCTAGTGGGAGCTTGGAGAAACATCTTTTTCGCAGAACGGGCTCAACACTGACTTGGTCAAAAAGAATGAAGATTGCTTTGCATGCTGCAAGAGGGCTTGCTTTTCTTCACGGGGCAGAAAGGCCCATCATATATCGTGACTTCAAGACATCAAATATCTTGCTAGATGCAGATTTCAATGCAAAGCTTTCAGACTTTGGCCTTGCAAAGGATGGGCCGATGGGGGATCAAACACATGTTTCAACACGAGTAATGGGCACATATGGGTATGCTGCTCCGGAGTATGTCATGACTGGGCATTTGACTGCTCGAAGTGATGTGTATGGTTTTGGGGTGGTGCTACTTGAATTACTTATTGGTAGGAGAGCACTAGACAAGAGCAGGCCCAGTCGAGAGCACAACTTGGTTGAGTGGGCACGGCCACTGTTGAATAATAATAAAAAACTTCTCAAAATTTTAGACCCGAAAGTAGAAGGGCAATATTCAAGTAAAACTGCAACAAAGGTCGCCCTTTTAGCATACAATTGTCTTAGCCAAAACCCAAAAGGCAGACCTCTCATGAGTCAGGTTGTTGAAATCCTTGAAAACTTTCAGTCAAATGAGGAAGGTCAAATCCTTCAAAGTGGTGGTAGTAGTGTAACCATTTACGAGGTTCCAAAGGGCAGCAATGATACTCCAACTAAGGGCTAA 1164 0.4235 MGICFSIEENQKHFSISDSISTNKPKSGNDSGAARATNTPLGTGSMNIKELREGAGYSNVHIFTYQELRLATKQFRPDFILGEGGFGVVYKGVIDDTVRTGYKSTEVAIKELNREGFQGDREWLAEVNYLGQFSHPNLVKLFGYCCEDEHRLLVYEYMASGSLEKHLFRRTGSTLTWSKRMKIALHAARGLAFLHGAERPIIYRDFKTSNILLDADFNAKLSDFGLAKDGPMGDQTHVSTRVMGTYGYAAPEYVMTGHLTARSDVYGFGVVLLELLIGRRALDKSRPSREHNLVEWARPLLNNNKKLLKILDPKVEGQYSSKTATKVALLAYNCLSQNPKGRPLMSQVVEILENFQSNEEGQILQSGGSSVTIYEVPKGSNDTPTKG 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05559 387 Gene3D Transferase(Phosphotransferase) domain 1 158 373 - -
Trre8g05559 387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Trre8g05559 387 Pfam Protein tyrosine and serine/threonine kinase 81 352 IPR001245 GO:0004672|GO:0006468
Trre8g05559 387 Gene3D Phosphorylase Kinase; domain 1 50 157 - -
Trre8g05559 387 CDD STKc_IRAK 81 355 - -
Trre8g05559 387 FunFam Probable serine/threonine-protein kinase PBL8 158 370 - -
Trre8g05559 387 ProSitePatterns Protein kinases ATP-binding region signature. 81 110 IPR017441 GO:0005524
Trre8g05559 387 MobiDBLite consensus disorder prediction 16 45 - -
Trre8g05559 387 ProSiteProfiles Protein kinase domain profile. 75 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g05559 387 PANTHER OS01G0588500 PROTEIN-RELATED 36 356 - -
Trre8g05559 387 FunFam Serine/threonine-protein kinase BIK1 43 157 - -
Trre8g05559 387 SUPERFAMILY Protein kinase-like (PK-like) 56 353 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05559 Trre-Chr8 57140849 57144040 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05559 4 382 Glycoside Hydrolase AT3G07070 45.312 9.18e-105 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre8g05559 PK_Tyr_Ser-Thr 7.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05559 - - gmx:100800465 662.529