Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05553 ATGTTGGAAGGCGGCGCCAAGTTCCCAATAGATCTCAACAAGAATAATAACAACTTTTATGATTTCTCCCAAGGCTTTTACCACAAGCTTGGTGAGGGTACCAACATGTCAATTGACAGCGTCGGGAGCTTGCAAACAAGCAATGGAGGAGGATCGGTTGCAATGTCAATTGATAACAGTAGTGTTGGGTCCAATGATTCTCATACCCGCATGTTGGATCACCAAGGGTTGAAGAGGCGTGCTAATGATAACTATTCGGTTGCGCACAGTGCCAATCGTCGGGGAAGAGTCACACATGCATTGAGTGACGATGCTTTAGCTCAAGCTCTGATGGACAATAGTTCTCCGACTGAAGGGCTTGAAAATTTTGAAGAGTGGACAATTGATTTGAGGAAACTAAATATGGGTGAGGCTTTTGCTCAAGGAGCTTTTGGGAAACTCTACAGAGGTACTTACAATGGGGAGGATGTCGCTATCAAAATCTTGGAGAGACCTGAGAATGACATATCAAAGGCTCAGTTGATGGAACAACAGTTTCAACAAGAGGTCATGATGCTGGCTACACTGAAGCATCCCAACATAGTTCGTTTCATAGGTGCATGCCGTAAGCCTATGGTGTGGTGCATCGTTACTGAGTATGCTAAGGGTGGATCAGTTCGACAGTTCTTAACAAAGCGTCAAAACCGAACAGTTCCCCTCAAACTAGCTATCAAACAAGCTTTGGATGTTGCAAGAGGCATGGCATATGTTCATGGGCTGGGATTGATCCACAGGGACTTGAAATCTGACAACCTGTTGATTTTTGGTGACAAGTCAATCAAAATTGCTGACTTTGGAGTCGCCCGAATTGAGGTGCAAACTGAAGGAATGACTCCCGAAACTGGAACATACCGTTGGATGGCTCCGGAGATGATCCAACATAGGCCTTACACACAGAAAGTGGATGTATATAGCTTTGGGATTGTCCTGTGGGAGCTGATCACTGGTATGCTTCCATTTCAGAACATGACAGCAGTACAAGCAGCATTTGCAGTTGTCAATAGAAATGTTCGCCCGATCTTGCCCAATGATTGTTTGCCTGTTCTTCGTGAGATCATGACAAGGTGCTGGGATCCCAACCCTGATGTCAGACCACCTTTCACTGAAATTGTTGCAATGCTTGAAAATGCCGAGATCGAGGTGATGACAACCGTTAGGAAGGCAAGGTTCAGGTGTTGCATGACCCAACCAATGACTGCGGAGTGA 1245 0.4554 MLEGGAKFPIDLNKNNNNFYDFSQGFYHKLGEGTNMSIDSVGSLQTSNGGGSVAMSIDNSSVGSNDSHTRMLDHQGLKRRANDNYSVAHSANRRGRVTHALSDDALAQALMDNSSPTEGLENFEEWTIDLRKLNMGEAFAQGAFGKLYRGTYNGEDVAIKILERPENDISKAQLMEQQFQQEVMMLATLKHPNIVRFIGACRKPMVWCIVTEYAKGGSVRQFLTKRQNRTVPLKLAIKQALDVARGMAYVHGLGLIHRDLKSDNLLIFGDKSIKIADFGVARIEVQTEGMTPETGTYRWMAPEMIQHRPYTQKVDVYSFGIVLWELITGMLPFQNMTAVQAAFAVVNRNVRPILPNDCLPVLREIMTRCWDPNPDVRPPFTEIVAMLENAEIEVMTTVRKARFRCCMTQPMTAE 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05553 414 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 70 389 - -
Trre8g05553 414 PRINTS Tyrosine kinase catalytic domain signature 249 267 IPR001245 GO:0004672|GO:0006468
Trre8g05553 414 PRINTS Tyrosine kinase catalytic domain signature 295 305 IPR001245 GO:0004672|GO:0006468
Trre8g05553 414 PRINTS Tyrosine kinase catalytic domain signature 211 224 IPR001245 GO:0004672|GO:0006468
Trre8g05553 414 PRINTS Tyrosine kinase catalytic domain signature 314 336 IPR001245 GO:0004672|GO:0006468
Trre8g05553 414 PRINTS Tyrosine kinase catalytic domain signature 358 380 IPR001245 GO:0004672|GO:0006468
Trre8g05553 414 SUPERFAMILY Protein kinase-like (PK-like) 116 387 IPR011009 -
Trre8g05553 414 Pfam Protein tyrosine and serine/threonine kinase 134 387 IPR001245 GO:0004672|GO:0006468
Trre8g05553 414 FunFam Serine/threonine-protein kinase isoform 1 123 215 - -
Trre8g05553 414 ProSiteProfiles Protein kinase domain profile. 133 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g05553 414 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Trre8g05553 414 FunFam serine/threonine-protein kinase HT1 216 409 - -
Trre8g05553 414 CDD STKc_MAP3K-like 140 387 - -
Trre8g05553 414 Gene3D Phosphorylase Kinase; domain 1 121 215 - -
Trre8g05553 414 Gene3D Transferase(Phosphotransferase) domain 1 216 410 - -
Trre8g05553 414 SMART serkin_6 133 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05553 Trre-Chr8 57095656 57098509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05553 22 414 MAP Kinase Kinase Kinase AT2G24360 79.389 0.0 631
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Trre8g05553 PK_Tyr_Ser-Thr 4.7e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05553 - - gmx:100788536 804.283