Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05525 ATGGAAGATGCTGAAACGAAAGCAAGAGTTGAAGAAACAGTTCTTAAGATCCTCCACGAATCAAACATGGATGAGGTAACTGAATCAAAGATCCGAAAACAAGCCTCCACCGAATTGGACCTAAACCTAAACCAGCCTCCATTCAAAGCTTTGGTGAAACAAATCATCGAAGATTTTCTTGTAGAGAAGCAGCAACAACAACAAAAGGAAGAAGAAGAAAAGCAGCGAGAGAAAGAAGAAGAAGTAGAAGAAGAAGAAAAGCAAGAGGTTAAACAAAAAGGTGTTTCCAGCAAAAGCAATGTCTATGTTGATTCTGGCGATCTCGTAATCTGCGAGCTTACTAAAAAGAGAAAGGTGACCATTCAGGATTTCAAAGGGAGAAGGTATGTCTCCATTCGCGAGTTTTACACCAAGGATGGCAAGGAACTTCCTTCTAATAAAGGAATAAGTTTGTCTGTGGAGCAGTGGGAAGCCTTTAAGGAATGTGTGCCTGCCATCGAAAAAGCCATCCAGAAAATGGAGTCGCGATTTGAAATCACTTCGAATCATGTTCTTTTAAGTGTACTGCAACTGGCTAGAGTATAG 585 0.4068 MEDAETKARVEETVLKILHESNMDEVTESKIRKQASTELDLNLNQPPFKALVKQIIEDFLVEKQQQQQKEEEEKQREKEEEVEEEEKQEVKQKGVSSKSNVYVDSGDLVICELTKKRKVTIQDFKGRRYVSIREFYTKDGKELPSNKGISLSVEQWEAFKECVPAIEKAIQKMESRFEITSNHVLLSVLQLARV 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05525 194 FunFam RNA polymerase II transcriptional coactivator KELP 102 174 - -
Trre8g05525 194 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 4 175 IPR045125 GO:0003713|GO:0060261
Trre8g05525 194 Gene3D Transcriptional Coactivator Pc4; Chain A 101 178 IPR009044 GO:0003677|GO:0006355
Trre8g05525 194 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 4 61 IPR014876 -
Trre8g05525 194 MobiDBLite consensus disorder prediction 67 91 - -
Trre8g05525 194 SUPERFAMILY ssDNA-binding transcriptional regulator domain 110 172 IPR009044 GO:0003677|GO:0006355
Trre8g05525 194 Pfam Transcriptional Coactivator p15 (PC4) 111 161 IPR003173 GO:0003677|GO:0006355
Trre8g05525 194 Coils Coil 56 93 - -
Trre8g05525 194 Pfam DEK C terminal domain 5 60 IPR014876 -
Trre8g05525 194 PIRSF RNA_polymII_KELP 1 177 IPR017415 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05525 Trre-Chr8 56882216 56884795 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Trre8g05525 DEK_C 9.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05525 K25815 - gmx:100305633 184.111