Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05524 ATGGCTTCAACTCCCAAGAAGTCTCTTCTATCTCCCTCTAAATCCAAACTCCGTTCACAATTCTCACCAATTGCAGCACCCGTTACTCCACAGTCGTTACCTACACGCAGATCCACGCGCTTAAGCTCCCTCCTCACCGATTCGCCTAAAACTCCCAATCTAGTTGATGCATTCAACGAAACTCCAAAGAAAGGGAGAAGAATCGGTGAGAGAACTGAGCCTGTGGCGAAATCTCGGCTTGATTTCTCTCGTAAAGATAAAATTCTAACTCGAAATAGCTCAATTAAAGTAGAAAATGAAAAAGATTCTGCTCAATTTTTGAAGAAGAGAAACAAGAAGAGTGAATCTGATGAAATTCCGTTTGCTCCACAATCGCCGGAGCAATCGAAATCTGTAAAGAGGAAGAGGAAAGTGGAGGATGAGAAAACGATTGAACTGTCGAAAAAGAGAAATGGGAAGGAGGAATCAGTTAAGGTTTCGTTTGCTCCAACGTCGCCAGATCAATCGGAAACTAAGAAGAGAAAGAGAAAGAATGAGGTTGAGAAAACGGTTGTTACTCGAGCTAGAGCTGCGAGAAAAGAGGGGAAAATTGCGAAGGTTCAGTATTATAAAAAAGTTGTTTATGATGGTGGTGAATTTGAAGTTGGGGATGATGTTTATGTGAAGAGGAGAGATGATGCTACTTCTGACGAGGAAGATCCTGAAGTAGAGGATTGTAAATTATGTTTTAGTTCTGGGGATGAAATCATGATTGAGTGTGATAGTTGTTTGGGTGGGTTTCATTTGAAATGCTTGACACCGCCGTTGAAAGAAGTTCCTGAAGGGGATTGGATTTGTGGGATCTGTGAGGGTCGTAAGATGGGTAAAGATGTTGATTTCCCCAAGCCTCCGGAAGGTAAGAAGATTGTTAGGACGATGCGCCAGAAGCTTCATTCAAGCGATTTGTGGGCTGCTCGCATTGAGAGTATATGGAAGGAAGTGGATGGCAGCTATTGGTGTCGCGTACGGTGGTATATGATCCCAGAAGAGACTTCTGTTGGACGACAGCCACATAACTTGAGCAGAGAGCTATATCGGACCAATGATTTTGCAAACATTGAGATGGAATCTGTCCTCAGACACTGTTCTGTCATGACCCCTAAGGAGTATGCCAAAGCTAGCGACGAGGGAGATGATGTTTTCTTGTGCGAATATGAATATGACATCCGTTGGCACAGTTTCAAACGCTTGGCTGATATTGATGATGAAAGAGAGAATTCTGATGACAGTGACGGTGACGAAGACTGGAATGTAGACAAGGAACCAGACTCTGATACAGATGAAGATGTTGAATATGAAGAGGAAAATATTAAAACTACACAATCTCAACCACCAACAAGCCATCAATTAGCTGCAAATCTGCACAAGGGACGATTCTTTGGACTTCAGAAGATAGGCGCAAAAAGAATTCCAGAGCATATAAGGTCTCACAAACAGACTAATCTTGAAAGAGCAAAGGCATCACTGTTGTTAGCTTCGCTGCCCAAATCTCTACCTTGTAGAAATAAAGAAATGGACGAGATAACTACATTCATTAAAGGTGCTATTTCTGACAATCAATGTCTGGGGCGTTGCCTCTACATTCATGGTGTTCCGGGAACTGGCAAGACAATGAGTGTACTCTCAGTGATGAGGAGTTTGAGGTCAGAAGTTGATGCAGGAAACATCAAACCGTACTGTTTTGTAGAGATTAATGGTCTGAAATTGGCTTCACCAGAGAATATTTATAAGGTCATATACGAGGCATTAAATGGTCACAGAGTCGGATGGAAAGAGGCTCTACGTTTGCTGAATGAGAGGTTTGTGGAAGGGAAGAAAACTGGAGAAGAGGCTGACCGACCATGTATTTTGCTCATTGATGAACTTGATCTTCTTGTAACCAGAAACCAGTCGGTTCTGTACAATATCCTTGACTGGCCTACCAAGCCACATTCCAAGCTAATTGTGATAGGAATAGCAAATACAATGGATCTTCCAGAGAAGTTACTTCCTCGTATATCAAGCCGAATGGGCATCCAGAGGCTCTGCTTTGCCCCATATAATTATCAGCAGCTTCAAGAAATCATTTCGAGTCGCCTCAATGGAATTGATATATTTGAAAAACAGGCTATGGAATTTGCTTCAAGAAAGGTTGCAGCTATCTCTGGAGATGCACGCCGTGCTTTGGAAATATGCAGACGTGCAGCTGAAATTGCAGACTATCGTATTAAGAAGCTAGCTACAAATCCTGATAATGTTGCTGCAGGAAAGGGACTTGTTTGCATGGCAGACGTTGAAGCAGCCATTCAAGAAATGTTCCAAGCCCCTCATATTCAAGTGATGAAAAACTGCTCCAGACTTAGCAAAATTTTCCTGACAGCTATGGTGCACGAGCTTTACAAAACAGGAATGGGGGAAACCACTTTTGAAAAGTTGGCAACAACGGTTTCATGTATCTGTACCAGCAATGGAGAAGTGTTTCCTGGATATGATATCCTCCTGCAAGTTGGCTGTAAGCTGGGTGAATGTAGGATCATTTTGTGTGAAGCAGGTGCCAAGCACAGGTTGCAAAAGTTGCAGCTAAATTTCCCAAGCGATGATGTAACCTTTTCACTGAGAGACTGCAAAGATCTACCTTGGTTGTCCAAATATTTAATGTAG 2679 0.4252 MASTPKKSLLSPSKSKLRSQFSPIAAPVTPQSLPTRRSTRLSSLLTDSPKTPNLVDAFNETPKKGRRIGERTEPVAKSRLDFSRKDKILTRNSSIKVENEKDSAQFLKKRNKKSESDEIPFAPQSPEQSKSVKRKRKVEDEKTIELSKKRNGKEESVKVSFAPTSPDQSETKKRKRKNEVEKTVVTRARAARKEGKIAKVQYYKKVVYDGGEFEVGDDVYVKRRDDATSDEEDPEVEDCKLCFSSGDEIMIECDSCLGGFHLKCLTPPLKEVPEGDWICGICEGRKMGKDVDFPKPPEGKKIVRTMRQKLHSSDLWAARIESIWKEVDGSYWCRVRWYMIPEETSVGRQPHNLSRELYRTNDFANIEMESVLRHCSVMTPKEYAKASDEGDDVFLCEYEYDIRWHSFKRLADIDDERENSDDSDGDEDWNVDKEPDSDTDEDVEYEEENIKTTQSQPPTSHQLAANLHKGRFFGLQKIGAKRIPEHIRSHKQTNLERAKASLLLASLPKSLPCRNKEMDEITTFIKGAISDNQCLGRCLYIHGVPGTGKTMSVLSVMRSLRSEVDAGNIKPYCFVEINGLKLASPENIYKVIYEALNGHRVGWKEALRLLNERFVEGKKTGEEADRPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIANTMDLPEKLLPRISSRMGIQRLCFAPYNYQQLQEIISSRLNGIDIFEKQAMEFASRKVAAISGDARRALEICRRAAEIADYRIKKLATNPDNVAAGKGLVCMADVEAAIQEMFQAPHIQVMKNCSRLSKIFLTAMVHELYKTGMGETTFEKLATTVSCICTSNGEVFPGYDILLQVGCKLGECRIILCEAGAKHRLQKLQLNFPSDDVTFSLRDCKDLPWLSKYLM 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05524 892 MobiDBLite consensus disorder prediction 1 79 - -
Trre8g05524 892 Pfam ATPase family associated with various cellular activities (AAA) 540 685 IPR003959 GO:0005524|GO:0016887
Trre8g05524 892 Gene3D - 304 495 IPR043151 -
Trre8g05524 892 SUPERFAMILY FYVE/PHD zinc finger 226 286 IPR011011 -
Trre8g05524 892 MobiDBLite consensus disorder prediction 415 460 - -
Trre8g05524 892 SMART PHD_3 238 283 IPR001965 -
Trre8g05524 892 MobiDBLite consensus disorder prediction 129 156 - -
Trre8g05524 892 Pfam AAA lid domain 713 746 IPR041083 -
Trre8g05524 892 ProSiteProfiles BAH domain profile. 294 411 IPR001025 GO:0003682
Trre8g05524 892 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 217 293 IPR013083 -
Trre8g05524 892 MobiDBLite consensus disorder prediction 93 181 - -
Trre8g05524 892 MobiDBLite consensus disorder prediction 93 117 - -
Trre8g05524 892 FunFam Origin recognition complex subunit 1 688 780 - -
Trre8g05524 892 Coils Coil 97 117 - -
Trre8g05524 892 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 343 886 - -
Trre8g05524 892 MobiDBLite consensus disorder prediction 417 447 - -
Trre8g05524 892 Gene3D - 496 688 IPR027417 -
Trre8g05524 892 ProSiteProfiles Zinc finger PHD-type profile. 236 285 IPR019787 -
Trre8g05524 892 SMART AAA_5 535 689 IPR003593 GO:0016887
Trre8g05524 892 FunFam Origin recognition complex subunit 1 492 691 - -
Trre8g05524 892 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 505 751 IPR027417 -
Trre8g05524 892 Pfam BAH domain 318 408 IPR001025 GO:0003682
Trre8g05524 892 FunFam Origin recognition complex subunit 1 234 301 - -
Trre8g05524 892 SMART BAH_4 211 411 IPR001025 GO:0003682
Trre8g05524 892 ProSitePatterns Zinc finger PHD-type signature. 239 282 IPR019786 -
Trre8g05524 892 MobiDBLite consensus disorder prediction 1 55 - -
Trre8g05524 892 FunFam Origin recognition complex subunit 1 302 494 - -
Trre8g05524 892 Pfam PHD-finger 239 283 IPR019787 -
Trre8g05524 892 Gene3D - 689 762 - -
Trre8g05524 892 MobiDBLite consensus disorder prediction 60 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05524 Trre-Chr8 56872697 56879710 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05524 101 891 Core DNA Replication Machinery Family AT4G14700 64.677 0.0 1016
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre8g05524 AAA 2.3e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05524 K02603 - gmx:100798547 1309.28