Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05523 ATGGCTTCAACTCCCAAGAAGTCTCTTCTATCTCCCTCTAAATCCAAACTCCGTTCACAATTCTCACCAATTGCAGCACCCGTTACTCCACAGTCGTTACCTACACGCAGATCCACGCGCTTAAGCTCCCTCCTCACCGATTCGCCTAAAACTCCCAATCTAGTTGATGCATTCAACGAAACTCCAAAGAAAGGGAGAAGAATCGGTGAGAGAACTGAGCCTGTGGCGAAATCTCGGCTTGATTTCTCTCGTAAAGATAAAATTCTAACTCGAAATAGCTCAATTAAAGTAGAAAATGAAAAAGATTCTGCTCAATTTTTGAAGAAGAGAAACAAGAAGAGTGAATCTGATGAAATTCCGTTTGCTCCACAATCGCCGGAGCAATCGAAATCTAGAAAGAGAAAGAATGAGGTTGAGAAAACGGTTGTTACTCGAGCTAGAGCTGCGAGAAAAGAGGGGAAAATTGCGAAGGTTCAGTATTATAAAAAAGTTGTTTATGATGGTGGTGAATTTGAAGTTGGGGATGATGTTTATGTGAAGAGGAGAGATGATGCTACTTCTGACGAGGAAGATCCTGAAGTAGAGGATTGTAAATTATGTTTTAGTTCTGGGGATGAAATCATGATTGAGTGTGATAGTTGTTTGGGTGGGTTTCATTTGAAATGCTTGACACCGCCGTTGAAAGAAGTTCCTGAAGGGGATTGGATTTGTGGGATCTGTGAGGGTCGTAAGATGGGTAAAGATGTTGATTTCCCCAAGCCTCCGGAAGGTAAGAAGATTGTTAGGACGATGCGCCAGAAGCTTCATTCAAGCGATTTGTGGGCTGCTCGCATTGAGAGTATATGGAAGGAAGTGGATGGCAGCTATTGGTGTCGCGTACGGTGGTATATGATCCCAGAAGAGACTTCTGTTGGACGACAGCCACATAACTTGAGCAGAGAGCTATATCGGACCAATGATTTTGCAAACATTGAGATGGAATCTGTCCTCAGACACTGTTCTGTCATGACCCCTAAGGAGTATGCCAAAGCTAGCGACGAGGGAGATGATGTTTTCTTGTGCGAATATGAATATGACATCCGTTGGCACAGTTTCAAACGCTTGGCTGATATTGATGATGAAAGAGAGAATTCTGATGACAGTGACGGTGACGAAGACTGGAATGTAGACAAGGAACCAGACTCTGATACAGATGAAGATGTTGAATATGAAGAGGAAAATATTAAAACTACACAATCTCAACCACCAACAAGCCATCAATTAGCTGCAAATCTGCACAAGGGACGATTCTTTGGACTTCAGAAGATAGGCGCAAAAAGAATTCCAGAGCATATAAGGTCTCACAAACAGACTAATCTTGAAAGAGCAAAGGCATCACTGTTGTTAGCTTCGCTGCCCAAATCTCTACCTTGTAGAAATAAAGAAATGGACGAGATAACTACATTCATTAAAGGTGCTATTTCTGACAATCAATGTCTGGGGCGTTGCCTCTACATTCATGGTGTTCCGGGAACTGGCAAGACAATGAGTGTACTCTCAGTGATGAGGAGTTTGAGGTCAGAAGTTGATGCAGGAAACATCAAACCGTACTGTTTTGTAGAGATTAATGGTCTGAAATTGGCTTCACCAGAGAATATTTATAAGGTCATATACGAGGCATTAAATGGTCACAGAGTCGGATGGAAAGAGGCTCTACGTTTGCTGAATGAGAGGTTTGTGGAAGGGAAGAAAACTGGAGAAGAGGCTGACCGACCATGTATTTTGCTCATTGATGAACTTGATCTTCTTGTAACCAGAAACCAGTCGGTTCTGTACAATATCCTTGACTGGCCTACCAAGCCACATTCCAAGCTAATTGTGATAGGAATAGCAAATACAATGGATCTTCCAGAGAAGTTACTTCCTCGTATATCAAGCCGAATGGGCATCCAGAGGCTCTGCTTTGCCCCATATAATTATCAGCAGCTTCAAGAAATCATTTCGAGTCGCCTCAATGGAATTGATATATTTGAAAAACAGGCTATGGAATTTGCTTCAAGAAAGGTTGCAGCTATCTCTGGAGATGCACGCCGTGCTTTGGAAATATGCAGACGTGCAGCTGAAATTGCAGACTATCGTATTAAGAAGCTAGCTACAAATCCTGATAATGTTGCTGCAGGAAAGGGACTTGTTTGCATGGCAGACGTTGAAGCAGCCATTCAAGAAATGTTCCAAGCCCCTCATATTCAAGTGATGAAAAACTGCTCCAGACTTAGCAAAATTTTCCTGACAGCTATGGTGCACGAGCTTTACAAAACAGGAATGGGGGAAACCACTTTTGAAAAGTTGGCAACAACGGTTTCATGTATCTGTACCAGCAATGGAGAAGTGTTTCCTGGATATGATATCCTCCTGCAAGTTGGCTGTAAGCTGGGTGAATGTAGGATCATTTTGTGTGAAGCAGGTGCCAAGCACAGGTTGCAAAAGTTGCAGCTAAATTTCCCAAGCGATGATGTAACCTTTTCACTGAGAGACTGCAAAGATCTACCTTGGTTGTCCAAATATTTAATGTAG 2553 0.425 MASTPKKSLLSPSKSKLRSQFSPIAAPVTPQSLPTRRSTRLSSLLTDSPKTPNLVDAFNETPKKGRRIGERTEPVAKSRLDFSRKDKILTRNSSIKVENEKDSAQFLKKRNKKSESDEIPFAPQSPEQSKSRKRKNEVEKTVVTRARAARKEGKIAKVQYYKKVVYDGGEFEVGDDVYVKRRDDATSDEEDPEVEDCKLCFSSGDEIMIECDSCLGGFHLKCLTPPLKEVPEGDWICGICEGRKMGKDVDFPKPPEGKKIVRTMRQKLHSSDLWAARIESIWKEVDGSYWCRVRWYMIPEETSVGRQPHNLSRELYRTNDFANIEMESVLRHCSVMTPKEYAKASDEGDDVFLCEYEYDIRWHSFKRLADIDDERENSDDSDGDEDWNVDKEPDSDTDEDVEYEEENIKTTQSQPPTSHQLAANLHKGRFFGLQKIGAKRIPEHIRSHKQTNLERAKASLLLASLPKSLPCRNKEMDEITTFIKGAISDNQCLGRCLYIHGVPGTGKTMSVLSVMRSLRSEVDAGNIKPYCFVEINGLKLASPENIYKVIYEALNGHRVGWKEALRLLNERFVEGKKTGEEADRPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIANTMDLPEKLLPRISSRMGIQRLCFAPYNYQQLQEIISSRLNGIDIFEKQAMEFASRKVAAISGDARRALEICRRAAEIADYRIKKLATNPDNVAAGKGLVCMADVEAAIQEMFQAPHIQVMKNCSRLSKIFLTAMVHELYKTGMGETTFEKLATTVSCICTSNGEVFPGYDILLQVGCKLGECRIILCEAGAKHRLQKLQLNFPSDDVTFSLRDCKDLPWLSKYLM 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05523 850 ProSiteProfiles Zinc finger PHD-type profile. 194 243 IPR019787 -
Trre8g05523 850 ProSitePatterns Zinc finger PHD-type signature. 197 240 IPR019786 -
Trre8g05523 850 MobiDBLite consensus disorder prediction 1 79 - -
Trre8g05523 850 FunFam Origin recognition complex subunit 1 192 259 - -
Trre8g05523 850 Pfam BAH domain 276 366 IPR001025 GO:0003682
Trre8g05523 850 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 463 709 IPR027417 -
Trre8g05523 850 ProSiteProfiles BAH domain profile. 252 369 IPR001025 GO:0003682
Trre8g05523 850 FunFam Origin recognition complex subunit 1 450 649 - -
Trre8g05523 850 Gene3D - 454 646 IPR027417 -
Trre8g05523 850 MobiDBLite consensus disorder prediction 100 117 - -
Trre8g05523 850 FunFam Origin recognition complex subunit 1 646 738 - -
Trre8g05523 850 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 301 844 - -
Trre8g05523 850 MobiDBLite consensus disorder prediction 373 418 - -
Trre8g05523 850 MobiDBLite consensus disorder prediction 100 141 - -
Trre8g05523 850 SMART PHD_3 196 241 IPR001965 -
Trre8g05523 850 Gene3D - 647 720 - -
Trre8g05523 850 Coils Coil 97 117 - -
Trre8g05523 850 FunFam Origin recognition complex subunit 1 260 452 - -
Trre8g05523 850 Gene3D - 262 453 IPR043151 -
Trre8g05523 850 SUPERFAMILY FYVE/PHD zinc finger 184 244 IPR011011 -
Trre8g05523 850 MobiDBLite consensus disorder prediction 375 405 - -
Trre8g05523 850 Pfam AAA lid domain 671 704 IPR041083 -
Trre8g05523 850 SMART BAH_4 169 369 IPR001025 GO:0003682
Trre8g05523 850 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 175 251 IPR013083 -
Trre8g05523 850 MobiDBLite consensus disorder prediction 1 55 - -
Trre8g05523 850 Pfam PHD-finger 197 241 IPR019787 -
Trre8g05523 850 Pfam ATPase family associated with various cellular activities (AAA) 498 643 IPR003959 GO:0005524|GO:0016887
Trre8g05523 850 MobiDBLite consensus disorder prediction 60 79 - -
Trre8g05523 850 SMART AAA_5 493 647 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05523 Trre-Chr8 56872697 56879710 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05523 2 849 Core DNA Replication Machinery Family AT4G14700 62.005 0.0 1020
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre8g05523 AAA 2.1e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05523 K02603 - gmx:100814940 1314.67