Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05517 ATGGAATCAGATTTTGAAACGAACGATATGCTCACACTGTCACAAGATTCATTTGATACCAATGACAATGATAATTTAGATGTTGAAGGGGAAAGATGTGGAATATGTATGGATATGGTTATTGATAGGGGAGTACTAGATTGCTGTCAGCACTGGTTCTGCTTTGTATGCATTGACAACTGGGCTTCCATCACTAATCTCTGCCCACTTTGCCAGAATGAGTTTCAGTTGATTACTTGTGTTCCAGTATACGATACCATAGGGAGCAATAAAGTTGAAGATGGCTCACTCTTCAGAGACGACGACGATGACTGGTCGATTGAAGGGGAGACTAACAGTCTGTCATTTCCCTCTTACTACATTGATGAAAATGCAGTTACATGCTTGGATGGTGATGGCTGCAAAATTCGAAATGGATTGGCGAGTATTGAAGGAGATTCTGGTCTTGATACATCAATTGCTTGCGATTCATGTGATATATGGTATCACGCCTTCTGTGTAGGATTTGATACTGAAGGTACATCTGAGAGTACATGGTTATGCCCAAGATGTGTGGTTGATGAAGTTTCTAAAGAAACAGATACCAATTCAATAAAAGAGGCAACCCTGGAATGTAACCCAGATAACAATAACATTAAATGTCATGCTGAGGATTCCAGATTAGTGTCCGTGTCCATTGCTGATACTGGAGAGACTGCTGTTGTTGTCTCAATGGTTGACAGAAACAAATGGGTTCCAGAAACAAGCGAGGGCAGTCAATTGCCTCCTGAAGTTGATAGGGATTTGTTGACTGAACCATTGAATTTAATGTCCCAAAAAAATAATCAGATGCAGGAAACAGAGAAGACAACTATGTCACCGATCATGGAGGGAGAAAAATTAGAGCTGTCCTTATCACACAATATGTCATGTAACCCAACTTCTAAATCCTCCGTCCTAAATGATTTAAAGAAAAGTGATAATGGAACAAGATGTGAACTGAGTAGCTTTGACGGAGTCAAGCTATTTGATGAGTCCACTGTCAAAACTAGTCCGTGCAAAATTGAATCTGATATGGGTCTTCATCTTGGTTTGTCGGTGGGCTCTTTTTTATCCGTTGATAGTGTGAACAAGAGCAAAACAAAAGATCAAGCAACTAATGTCCCGTGCTCGAGTCCAGAAGAATATATTTTGAAAGGAGATGAAATTGAAACCAATGCTTGTGAGGACAATGCCAGACTGACTGGTAGAAAGAGGAAGCATGTTGATTTCAGTCACGAGCAAGTTCATATAAAAGTTGATGAAGATGCCAAGCCTGAACTATCAGCTGAAGCTTCACAAAAGAAAATTAGAGCGGCTGCTAGTCAAATGATTAATGCTAATGACTCAGTCGATGCTCAACTTTCTGACAACACTAAGAAGAGGCCTGTTTTAAAACATTCTCCAACAAAGGAAATTGTGGCATCAGATATAGTGAATATCGTTAAAGGGGCGAACCGTAGGCTTTCCAAGGGACTTGCAGACACTAATGCTAGTCGAAAGTTGGCTGAAAAGAAAGAAAACATGGCTGGATTGAGGGTTAAAAAGATTATGAAGAGAGGTTCTGATGATGGAGAATCATCCTCATTAGTTCAAAATCTAAGGAAGGAAATTAGAGAAGCTGTCCGCAACAAATCCTCTATAAACTTCGGGGAAAACCATTTTGATAAAAATCTTCTTGAAGCATTCAGGGCTGCTATAACAGGGCCTAAAACTGAACTTGTAAATAAGTTATCCCCCTCAGCTCTGAAAGCAAGGAAGTCAATGTTGCAGAAAGGAAAAGTACGAGAAAATCTAACAAGGAAAATTTTTGCGACATCCAATGGAAGAAGAAAGCGTACATGGGATAGGGACTGTGAAATTGAGTTTTGGAAATATCGTTGCACGAGAGCTTCAAAGCCTGAAAAGATTGAAACTTTAAAATCAGTTCTTGATCTCTTAAGAAAAAGTTCAGAGAACCCAGAATCAGAGCAAGCTCCTGAACGTCAGGCCAAGAATCCAATTCTCTCCAGATTGTATATAGCAGACACATCTGTTTTCCCACGGAAAGCTGATGTCAAACCTTTTTCAGAGCAGACTAAACAAAATAACTCAACAGCAAAAGGACCAAATCAATCTCTTGATAACAAGACTATTAAAGCAGCAGAGGTAAATAATCTTTTATCAAAGACCGGAGTTTGTTCTTCTGAGAAAAAAGTAGATAAGAAGATTGTACGCAGTCCGGTTGGTAAAGTACATTTAAGCAGTCACTCAGAAGGGACATCAGTTTCTTCTTCTGCTGGTGCCAAAGTTGGCACAAAAGAGTCAGGCCTGAAATCTGATACTATGAAAAGTGATAAAAGAAAATGGGCCTTGGAGGTTCTTGCAAGGAAAACAGCTGTTGCAAGCAGTAACACAGCAAATGAAAGTCAGGAAGACGATGCAATTTTTAAAGGAAATTATCCTTTGCTTGCCCAATTACCAATTGATATGAGACCCGTGTTGGCACCTTGTCGCCACAATAAAATTCCTTTATCAGTGAGGCAGACACAGCTTTACCGCCTGACGGAACGCTTATTGAGGAACACAAATCTGACAATTATTCACAGAACTGCATATACAGAATTGGCTGTTGCAGATGCAATTAATATTGAAAAGGAGGTTGCTGACAGATCAAACAGCAAGCTAGTGTATCAGAATCTTTGTTCACAAGAGATATTGCGTCGCACAAATAACACAAAATCCAATGTAGACACAGAAACAAGTCCACCAACCTCATCGCCAGTGCATACTGGTCAATCAGAACCGCTAGTGCATACTGAACAATCAGAACTGAATACTGATGATCTTTCTACTGACCCTGCAGTTCAAATAGCATTGCAAAATGCTGGGCTGTTGTCAGATTCGCCACCAAGCAGTCCACATAAGAACAAAGAAATACATAATGAAAATGAAATGTCAGGGCCTGATGATATACTTGAATTAGATTCTCATCCTGAGCTGGATATTTATGGTGATTTTGAGTATGATTTGGAAGAGGATGATTACATAGGCGCTAGTGTTACAAATATCCCAAACCAAACACAAGAGCAAAGTGAACCAAAAGTGAAACTTGTTTTTTCCACCACGAGCTTGAAGAAAACAAATAATGCTTCGGATTCTGCAGACATTAAGGGGTCTGAAAACAATGAAGTGCCAGGAGATGCCTCTCACTCACCAAACTGTCACAGTGATGCAGTCCACAGGGATTCTACCATTGATGGGGAGATTGGCCAGCCTTCTGCTTCTTCTGGGCTACAACCATGTGAGGGTGCTGTTGAGCCGGTTGATTCAGAATTTGAAGAATTATATGGCCCTGATAAAGAACCACTTATGAAAAAGTTTCCAGATAGTGAATTACTATCACCACATGGAGAAGGCAAGACAGAAACTCAAAGCGAGAATAATGATTGCCATAAGGACGAAGAACAGGTCTTAGACAAACTAGAAAATGGTGCTGAAGTCAGGAATGAGAATCTTGCAGAAAATGCGTCTGTCCCCACTATCACGGACAAATCTAATATATCTGGGACCGATGAAAATTTTCAAAGGAAGGAAGAGAAATCTGACACCCCTGCCCAGCAGTCTAACAATGAAAATCAAGTAGCGAAGAAGGTAGAAGCATACATCAAGGAGCATATCAGGCCATTGTGCAAGAGTGGTGTTATCTCGGCTGAACAGTACAGGTGGGCTGTTGCAAAAACAACTGATAAGGTTATGAAGTATCATTGCAAATCAAAGAATGCTAATTTCCTCATAAAGGAAGGTGAGAAAGTAAAGAAACTTGCAGAGCAGTATGTTGAAACAGCCCAACAGAATAGAAAAAGTTGA 3867 0.4011 MESDFETNDMLTLSQDSFDTNDNDNLDVEGERCGICMDMVIDRGVLDCCQHWFCFVCIDNWASITNLCPLCQNEFQLITCVPVYDTIGSNKVEDGSLFRDDDDDWSIEGETNSLSFPSYYIDENAVTCLDGDGCKIRNGLASIEGDSGLDTSIACDSCDIWYHAFCVGFDTEGTSESTWLCPRCVVDEVSKETDTNSIKEATLECNPDNNNIKCHAEDSRLVSVSIADTGETAVVVSMVDRNKWVPETSEGSQLPPEVDRDLLTEPLNLMSQKNNQMQETEKTTMSPIMEGEKLELSLSHNMSCNPTSKSSVLNDLKKSDNGTRCELSSFDGVKLFDESTVKTSPCKIESDMGLHLGLSVGSFLSVDSVNKSKTKDQATNVPCSSPEEYILKGDEIETNACEDNARLTGRKRKHVDFSHEQVHIKVDEDAKPELSAEASQKKIRAAASQMINANDSVDAQLSDNTKKRPVLKHSPTKEIVASDIVNIVKGANRRLSKGLADTNASRKLAEKKENMAGLRVKKIMKRGSDDGESSSLVQNLRKEIREAVRNKSSINFGENHFDKNLLEAFRAAITGPKTELVNKLSPSALKARKSMLQKGKVRENLTRKIFATSNGRRKRTWDRDCEIEFWKYRCTRASKPEKIETLKSVLDLLRKSSENPESEQAPERQAKNPILSRLYIADTSVFPRKADVKPFSEQTKQNNSTAKGPNQSLDNKTIKAAEVNNLLSKTGVCSSEKKVDKKIVRSPVGKVHLSSHSEGTSVSSSAGAKVGTKESGLKSDTMKSDKRKWALEVLARKTAVASSNTANESQEDDAIFKGNYPLLAQLPIDMRPVLAPCRHNKIPLSVRQTQLYRLTERLLRNTNLTIIHRTAYTELAVADAINIEKEVADRSNSKLVYQNLCSQEILRRTNNTKSNVDTETSPPTSSPVHTGQSEPLVHTEQSELNTDDLSTDPAVQIALQNAGLLSDSPPSSPHKNKEIHNENEMSGPDDILELDSHPELDIYGDFEYDLEEDDYIGASVTNIPNQTQEQSEPKVKLVFSTTSLKKTNNASDSADIKGSENNEVPGDASHSPNCHSDAVHRDSTIDGEIGQPSASSGLQPCEGAVEPVDSEFEELYGPDKEPLMKKFPDSELLSPHGEGKTETQSENNDCHKDEEQVLDKLENGAEVRNENLAENASVPTITDKSNISGTDENFQRKEEKSDTPAQQSNNENQVAKKVEAYIKEHIRPLCKSGVISAEQYRWAVAKTTDKVMKYHCKSKNANFLIKEGEKVKKLAEQYVETAQQNRKS 1288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05517 1288 PANTHER RING FINGER PROTEIN 41, 151 116 1279 - -
Trre8g05517 1288 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 191 IPR013083 -
Trre8g05517 1288 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Trre8g05517 1288 Pfam Ring finger domain 32 72 IPR001841 -
Trre8g05517 1288 SUPERFAMILY FYVE/PHD zinc finger 147 191 IPR011011 -
Trre8g05517 1288 MobiDBLite consensus disorder prediction 1113 1167 - -
Trre8g05517 1288 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 106 IPR013083 -
Trre8g05517 1288 Pfam PHD-finger 150 185 IPR019787 -
Trre8g05517 1288 SUPERFAMILY RING/U-box 32 78 - -
Trre8g05517 1288 ProSiteProfiles Zinc finger RING-type profile. 33 72 IPR001841 -
Trre8g05517 1288 MobiDBLite consensus disorder prediction 750 781 - -
Trre8g05517 1288 MobiDBLite consensus disorder prediction 1042 1069 - -
Trre8g05517 1288 SMART ring_2 33 71 IPR001841 -
Trre8g05517 1288 MobiDBLite consensus disorder prediction 1173 1189 - -
Trre8g05517 1288 MobiDBLite consensus disorder prediction 964 995 - -
Trre8g05517 1288 MobiDBLite consensus disorder prediction 1042 1214 - -
Trre8g05517 1288 MobiDBLite consensus disorder prediction 973 995 - -
Trre8g05517 1288 ProSiteProfiles Zinc finger PHD-type profile. 65 187 IPR019787 -
Trre8g05517 1288 MobiDBLite consensus disorder prediction 693 715 - -
Trre8g05517 1288 MobiDBLite consensus disorder prediction 696 715 - -
Trre8g05517 1288 MobiDBLite consensus disorder prediction 753 770 - -
Trre8g05517 1288 SMART PHD_3 133 185 IPR001965 -
Trre8g05517 1288 MobiDBLite consensus disorder prediction 908 947 - -
Trre8g05517 1288 MobiDBLite consensus disorder prediction 1190 1204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05517 Trre-Chr8 56830320 56839767 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05517 33 84 C3H Transcription Factor Family AT3G58030 37.037 5.78e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre8g05517 PHD 2.2e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05517 - - gmx:100808102 1808.11