Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05509 ATGGCTTCCTCAACTCTAATATGTGTATGTTACTATGTCTTAATTATTATTTTCCACCTTCAAACTTCTAAAGGCAAACAAATATGCAAAACCTTAACATGTGGTGACATAGATATTTCTTTTCCTTTCGACTTAATAGAAGCTAATCAATATCCTCGTTGTAGCTATTTTCAAAATCCATCCTTCCAACTTTCTTGTAACAACCAAAACCAAACAATCCTCAATCTCCCCGAAACAGATAACTTAATCATTAAAAACATCGATTACAAAACCCAAACAATTAAAGTCAACGACCCTAAAGGATGTCTCCCAAAACGTTACCTAGATAACAATTTTGACCTTTCAAATTCACCTTTTAAATTAAACCTCGAAAGTTACAATCTTAACCTCACTTTCCTTCGTTGTCCTTCCAACGTTACTACGGTTTCTTCATCATCGTCATCATCATCATCGTTTCAATTTCCCTTAACACCAATTTCTTGTTTAAGCAATGATGAAAAACATTCGAATTTGTCTTCTTCTTCTTCGGTTATAGTTTTATGGGCACCACCTTTTGCGAATACAACGTTGTTTGGAACGTGTGAAGTGATTTCAACGGCTTTTGTTCCGTTACCGTGGAAGGATGTGAATATGTGGCCATTTTGGCGGGATATTAACAGTGATGTTGAGTTGGTGTGGACTAATCCTAGATGTGGTGAGTGTGCACTTAATGGTCAAGTTTGTGGGTTTTCTGAGGATTTTAAAAATAACCTTCAAGTTCAATGTTTTGACACTTCCTCCAATGAAGGTCTCTCAAGAAGTGCCAAATACGGTATGGCAATCGGAGTGGGAATACCTACACTTGTATGTCTAATTGGCTTTGCTTGCTTCTGTTGTGGTAAGATGAGAACAACCCCACTTCATGGACAAAGTAGCTCATCAAATGTTCCTACAAATTCTACAATATCAATTTCCTTAGAACCACTCCCTTCTTTTGTAACGGGCCTTGATGGTGCCACAATTGAAAAGTATCCCAAAACTCTTATTGGAGAAAGTGGACGATTATTAAAGCCTAATGACAATACTTGCTCAATTTGTTTATCTGAATATCAACCTAAAGAGACCTTGAGAAGCATCCCTGAATGTAACCATTATTTTCATGCTGCTTGTATTGATGAATGGCTCAAAATGAATGGTACATGCCCCATATGTAGGAATTCACCGGAGGCATATTCTACCACGGGTCCTTATTTTGCTTCGCTATTGCTATCCCCAAACTCGTCATCATTGTCCACCACTTCACGATAG 1287 0.3761 MASSTLICVCYYVLIIIFHLQTSKGKQICKTLTCGDIDISFPFDLIEANQYPRCSYFQNPSFQLSCNNQNQTILNLPETDNLIIKNIDYKTQTIKVNDPKGCLPKRYLDNNFDLSNSPFKLNLESYNLNLTFLRCPSNVTTVSSSSSSSSSFQFPLTPISCLSNDEKHSNLSSSSSVIVLWAPPFANTTLFGTCEVISTAFVPLPWKDVNMWPFWRDINSDVELVWTNPRCGECALNGQVCGFSEDFKNNLQVQCFDTSSNEGLSRSAKYGMAIGVGIPTLVCLIGFACFCCGKMRTTPLHGQSSSSNVPTNSTISISLEPLPSFVTGLDGATIEKYPKTLIGESGRLLKPNDNTCSICLSEYQPKETLRSIPECNHYFHAACIDEWLKMNGTCPICRNSPEAYSTTGPYFASLLLSPNSSSLSTTSR 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05509 428 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 10 401 IPR046948 -
Trre8g05509 428 Pfam Wall-associated receptor kinase galacturonan-binding 29 98 IPR025287 GO:0030247
Trre8g05509 428 SUPERFAMILY RING/U-box 349 401 - -
Trre8g05509 428 CDD RING-H2_EL5-like 356 398 - -
Trre8g05509 428 ProSiteProfiles Zinc finger RING-type profile. 356 398 IPR001841 -
Trre8g05509 428 SMART ring_2 356 397 IPR001841 -
Trre8g05509 428 Pfam Ring finger domain 354 398 IPR001841 -
Trre8g05509 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 325 403 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05509 Trre-Chr8 56748615 56752781 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05509 27 401 C3H Transcription Factor Family AT2G46495 33.770 1.38e-51 175