Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05508 ATGTCTTCCACAACTCTAATCACTGTATTTTATGTCTTAATTATTATTTTCCAACTTCAAACATCTAAAGCCAAACAAATAATCTGCAAAACCTTATCATGTGGTGACATAGATATTGCTTTTCCTTTCATCTTAAAAGAAGCTAATCAAAATCAAGATCCTCTTTGTAGCTATTTTCCAAATCCAACCTTCCAACTTTCTTGCAACAACCAAAGCCAAACAATCCTCAATCTCCCCAAAACACAGAACCTAATCATTAAAAACATCAATTACAAAACTCAAACAATCCAAGTCATTGACCCCAAAGGATGTCTTCCAAAACGTTACTTAGATAACAATTTTAATCTTTCAGGTTCACCTTTTAAATTAAACCCCGAAATTTACAATACTAACGGTGATAACCTCACTTTCATTCGTTGTCCATCCAACGTTACTACCTACTCATCAACTCAATTTCCATTAACACCAATTTCTTGTTTAAGCAACGAGGAAGAACGTTCGAATTTGTCTTCCTCTTCGGTTATAGTTTCTTGGGTACCGACTGAATTAGTCGAAACAACGTTGTCACATACGTGTGAGGTGATTTCAACGGCTCTTGTTCCGTTACCATGGATGGATATGACTATGTGGCCATCTTGGCCTGATCTTAATAGTGATGTTGAATTGGTGTGGAATGAACCTAGATGTGGGAACTGTGCAGTTCATGATCAAGTTTGTGGATTCTCTGAGGATCAAAATAAGGTTCAAGTTCAATGTTTCCCTAATACTTCCAATCAAGGTCTCTTACAAAGTGCCAAATTCGGCATTGCTTTTGGATTGGGAATACCTGCACTTTTATTAATTGCCATAGCTTGCTTCTGTAATAATAGAAGAACAACCCAACTTGATGGACAAAGAAACTCATCAAATGTTCCTACAATAACAATTTCCTTAGAACCACTCCCTTCTTTTGTAACGGGTCTTGATGGTGCCACAATTGAAAAGTATCCCAAAACTCTTTTTGGTGAAAGTGGACGTTTATTAAAGCCTAATGACAATACTTGCTCAATTTGTTTATCTGAATATCAACTTAAAGAGACTTTGAGAAGCATCCCTGAATGTAACCATTATTTTCATGCTACTTGTATTGATGAGTGGCTCAAAATGAATGGTACATGTCCCATATGTAGGAATTCACCGGAGGTACATGCTTCTACGGGTCCATATTTTGCTTCATTATTGCTATCTCCAAATTCTTCATCATTGTCCTCTACTAGATAA 1260 0.3635 MSSTTLITVFYVLIIIFQLQTSKAKQIICKTLSCGDIDIAFPFILKEANQNQDPLCSYFPNPTFQLSCNNQSQTILNLPKTQNLIIKNINYKTQTIQVIDPKGCLPKRYLDNNFNLSGSPFKLNPEIYNTNGDNLTFIRCPSNVTTYSSTQFPLTPISCLSNEEERSNLSSSSVIVSWVPTELVETTLSHTCEVISTALVPLPWMDMTMWPSWPDLNSDVELVWNEPRCGNCAVHDQVCGFSEDQNKVQVQCFPNTSNQGLLQSAKFGIAFGLGIPALLLIAIACFCNNRRTTQLDGQRNSSNVPTITISLEPLPSFVTGLDGATIEKYPKTLFGESGRLLKPNDNTCSICLSEYQLKETLRSIPECNHYFHATCIDEWLKMNGTCPICRNSPEVHASTGPYFASLLLSPNSSSLSSTR 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05508 419 Pfam Wall-associated receptor kinase galacturonan-binding 29 100 IPR025287 GO:0030247
Trre8g05508 419 Pfam Ring finger domain 346 390 IPR001841 -
Trre8g05508 419 SUPERFAMILY RING/U-box 341 396 - -
Trre8g05508 419 CDD RING-H2_EL5-like 348 390 - -
Trre8g05508 419 SMART ring_2 348 389 IPR001841 -
Trre8g05508 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 317 394 IPR013083 -
Trre8g05508 419 ProSiteProfiles Zinc finger RING-type profile. 348 390 IPR001841 -
Trre8g05508 419 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 7 393 IPR046948 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05508 Trre-Chr8 56743607 56746076 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05508 29 393 C3H Transcription Factor Family AT2G46495 33.693 6.79e-50 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05508 - - tpra:123915638 657.907