Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05506 ATGAATTATTCGGTTGTTGCTATGATGTCTGATGCTGTTTTTGCTACACCGTGGGTATCATTTTGTGAGTTTATTTCATCGGCTTTGATACCTATTGAAGAAGGGAATAATTGGTTGTTTTGGAGTGATTATTATTCTGATATACCGTTGCATTGGGATAGTCCTGATTGTGGAAATTGTGTAGCTCGTGGAGGAAGATGTGGATTGGTTGCAGAGCATACTCTTATTAGCGTTGCTTGTTATGATCTTCCTAAACAAGGTCTATCGAGGAAAGTCAAATATGGTTTATCTCTAGGTCTAGGAATACCTGGAATCTTAGGTATTATTGTGCTTACATGTATGTTATGCAACAAAAAGAACACAACTAATCAATTACATCTTCAAAGAGACACTGAGTTTTCCACCATGATTATGCCACACCCCCCATTTGTAGTTATGGGCCTTGATGGGCCAACAATAGAAAGATATCCTAAAACCCAACTTGGTGAAAGTGGACGATTGCCTAGGCCCAATGACAATATTTGCTCAATATGTCTTTGTGAATACCAACCAAATGAAGTATTGAGGACTATCCCAGAATGTAATCACTATTTTCATGTGAATTGTATAGATGGATGGCTCAAGAGTAATGCTACTTGCCCTTTGTGTAGAAATTTTCCAGAGAGATCTACTTCATTTCCTTCTTTTTTGCCTGTATCACCAACTTCTTAA 711 0.3769 MNYSVVAMMSDAVFATPWVSFCEFISSALIPIEEGNNWLFWSDYYSDIPLHWDSPDCGNCVARGGRCGLVAEHTLISVACYDLPKQGLSRKVKYGLSLGLGIPGILGIIVLTCMLCNKKNTTNQLHLQRDTEFSTMIMPHPPFVVMGLDGPTIERYPKTQLGESGRLPRPNDNICSICLCEYQPNEVLRTIPECNHYFHVNCIDGWLKSNATCPLCRNFPERSTSFPSFLPVSPTS 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05506 236 ProSiteProfiles Zinc finger RING-type profile. 175 217 IPR001841 -
Trre8g05506 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 221 IPR013083 -
Trre8g05506 236 SMART ring_2 175 216 IPR001841 -
Trre8g05506 236 SUPERFAMILY RING/U-box 170 219 - -
Trre8g05506 236 CDD RING-H2_EL5-like 174 217 - -
Trre8g05506 236 Pfam Ring finger domain 174 217 IPR001841 -
Trre8g05506 236 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 220 IPR046948 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05506 Trre-Chr8 56739465 56741051 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05506 94 223 C3H Transcription Factor Family AT5G07040 45.038 2.73e-36 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05506 - - mtr:25502189 394.045